Poplar mosaic virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus

Average proteome isoelectric point is 7.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q6RBY7|Q6RBY7_9VIRU Movement protein TGB2 OS=Poplar mosaic virus OX=12166 GN=ORF3 PE=3 SV=1
MM1 pKa = 7.6WSDD4 pKa = 3.49SLVSRR9 pKa = 11.84VCVPIIVVCTSIALLNVVSFRR30 pKa = 11.84SEE32 pKa = 4.16CSCVVHH38 pKa = 5.67ITGEE42 pKa = 4.23SIDD45 pKa = 3.46IRR47 pKa = 11.84GCSFTPDD54 pKa = 4.11FIEE57 pKa = 4.11YY58 pKa = 10.54AKK60 pKa = 9.58TLRR63 pKa = 11.84VFNHH67 pKa = 7.3RR68 pKa = 11.84YY69 pKa = 9.19QEE71 pKa = 3.91

Molecular weight: 8.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q6RBY8|Q6RBY8_9VIRU Triple block protein 1 OS=Poplar mosaic virus OX=12166 GN=ORF2 PE=4 SV=1
MM1 pKa = 7.68PLSPPPDD8 pKa = 3.35HH9 pKa = 7.28SKK11 pKa = 9.56TFLVAAAGLSLVLCLYY27 pKa = 9.37TLTRR31 pKa = 11.84STLPGVGDD39 pKa = 4.47NIHH42 pKa = 6.38SLPHH46 pKa = 5.81GGQYY50 pKa = 10.2RR51 pKa = 11.84DD52 pKa = 3.38GTKK55 pKa = 10.35SINYY59 pKa = 7.9CSPGKK64 pKa = 10.32SYY66 pKa = 10.77PSSNLLRR73 pKa = 11.84GGHH76 pKa = 6.09FPALCAILLISGAILISYY94 pKa = 8.18RR95 pKa = 11.84FQPGALSRR103 pKa = 11.84CGVTHH108 pKa = 7.36

Molecular weight: 11.39 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2856

71

1992

476.0

53.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.353 ± 1.13

3.046 ± 0.722

4.902 ± 0.416

7.143 ± 1.043

5.357 ± 0.508

6.513 ± 0.558

2.486 ± 0.463

5.112 ± 0.664

6.513 ± 0.902

9.174 ± 0.95

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.381 ± 0.404

3.887 ± 0.547

4.167 ± 0.612

2.556 ± 0.438

5.917 ± 0.83

7.983 ± 0.733

4.587 ± 0.657

6.443 ± 0.885

1.085 ± 0.199

3.396 ± 0.774
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski