DeBrazza s monkey arterivirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Arnidovirineae; Arteriviridae; Simarterivirinae; Iotaarterivirus; Debiartevirus; Iotaarterivirus debrazmo

Average proteome isoelectric point is 7.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B6CFJ6|A0A0B6CFJ6_9NIDO Nucleocapsid protein OS=DeBrazza's monkey arterivirus OX=1965063 GN=ORF7 PE=3 SV=1
MM1 pKa = 7.89GDD3 pKa = 3.14QLLRR7 pKa = 11.84CVTPSCGIFLLLLCVLSCASNQTYY31 pKa = 10.09ICLPSFNSSLLLTINASTHH50 pKa = 5.32SCLFTGNVLVGSQYY64 pKa = 11.5GLPICPQANEE74 pKa = 4.56RR75 pKa = 11.84YY76 pKa = 9.35FDD78 pKa = 4.14ANASGQLEE86 pKa = 4.98LPTGLDD92 pKa = 3.69LVFLRR97 pKa = 11.84YY98 pKa = 8.87VWQHH102 pKa = 6.1LDD104 pKa = 3.3QFPSLFNGSKK114 pKa = 10.38PEE116 pKa = 3.94QQASCWVINSTQPTSTPSLPQEE138 pKa = 3.9YY139 pKa = 10.72LEE141 pKa = 4.12FWEE144 pKa = 4.7FQPLPLLLLILVLQLVMLLPPLL166 pKa = 3.87

Molecular weight: 18.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B6CFI5|A0A0B6CFI5_9NIDO ORF2a' protein OS=DeBrazza's monkey arterivirus OX=1965063 GN=ORF2a' PE=4 SV=1
MM1 pKa = 7.87PSQTGARR8 pKa = 11.84RR9 pKa = 11.84RR10 pKa = 11.84VDD12 pKa = 3.61MVTTICSDD20 pKa = 3.29PGYY23 pKa = 6.71TTLAFTIAPVLLACLRR39 pKa = 11.84LFRR42 pKa = 11.84PSVRR46 pKa = 11.84GVVCLLCIATLAYY59 pKa = 10.23AATAFNEE66 pKa = 4.17HH67 pKa = 6.34SLATILTISFILVYY81 pKa = 10.65LSYY84 pKa = 9.74KK85 pKa = 7.7TVAWVVIRR93 pKa = 11.84CRR95 pKa = 11.84MCRR98 pKa = 11.84LGRR101 pKa = 11.84QYY103 pKa = 9.16ITAPSSMVEE112 pKa = 3.97TSLGRR117 pKa = 11.84SAITAGQSAVVRR129 pKa = 11.84RR130 pKa = 11.84TSGLTSANGLLVPDD144 pKa = 3.98VKK146 pKa = 10.77RR147 pKa = 11.84IILHH151 pKa = 5.61GRR153 pKa = 11.84VAAKK157 pKa = 10.18KK158 pKa = 10.45GLVNLRR164 pKa = 11.84KK165 pKa = 10.32YY166 pKa = 10.37GWQTKK171 pKa = 9.44NKK173 pKa = 9.82

Molecular weight: 18.88 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12

1

13

7572

59

3587

582.5

63.39

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.509 ± 0.616

3.196 ± 0.204

4.226 ± 0.562

3.209 ± 0.203

4.437 ± 0.371

6.762 ± 0.719

2.773 ± 0.684

4.543 ± 0.375

3.711 ± 0.379

11.067 ± 0.6

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.373 ± 0.108

3.288 ± 0.362

6.194 ± 0.493

3.117 ± 0.367

5.137 ± 0.286

7.937 ± 0.578

6.894 ± 0.232

8.135 ± 0.625

1.149 ± 0.143

3.341 ± 0.222
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski