Bovine papillomavirus type 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Deltapapillomavirus

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|P0DOD6|VE8E2_BPV1 Protein E8^E2C OS=Bovine papillomavirus type 1 OX=337052 PE=3 SV=1
MM1 pKa = 7.49PNLWFLLFLGLVAAMQLLLLLFLLLFFLVYY31 pKa = 9.25WDD33 pKa = 4.88HH34 pKa = 7.04FEE36 pKa = 4.31CSCTGLPFF44 pKa = 4.63

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|P06931|VE6_BPV1 Protein E6 OS=Bovine papillomavirus type 1 OX=337052 GN=E6 PE=1 SV=1
MM1 pKa = 7.56ANDD4 pKa = 3.62KK5 pKa = 10.62EE6 pKa = 4.39IAQTEE11 pKa = 4.68SGSHH15 pKa = 6.02PKK17 pKa = 10.02DD18 pKa = 3.35LKK20 pKa = 10.23EE21 pKa = 3.88TLQEE25 pKa = 4.37KK26 pKa = 10.44KK27 pKa = 10.02PSQPSLSLLCSAPPPAVPSEE47 pKa = 4.08QASVGYY53 pKa = 8.37GTVLARR59 pKa = 11.84TPTIFLQARR68 pKa = 11.84GALFSALPPPRR79 pKa = 11.84AGHH82 pKa = 5.27GTGGLGIKK90 pKa = 10.01AGRR93 pKa = 11.84RR94 pKa = 11.84GAVARR99 pKa = 11.84LHH101 pKa = 6.82RR102 pKa = 11.84GRR104 pKa = 11.84TSDD107 pKa = 3.37SPKK110 pKa = 10.32AHH112 pKa = 6.38HH113 pKa = 5.96QQ114 pKa = 3.35

Molecular weight: 11.91 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9

0

9

2616

44

605

290.7

32.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.645 ± 0.566

2.408 ± 0.779

4.931 ± 0.21

6.269 ± 0.47

4.128 ± 0.578

7.607 ± 0.74

2.446 ± 0.187

3.631 ± 0.525

5.046 ± 0.736

9.557 ± 0.761

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.261 ± 0.256

3.67 ± 0.644

6.193 ± 1.146

4.014 ± 0.479

6.04 ± 0.596

8.104 ± 0.693

7.225 ± 0.833

5.543 ± 0.303

1.414 ± 0.247

2.867 ± 0.306
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski