Capsicum baccatum (Peruvian pepper)

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Average proteome isoelectric point is 6.68

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 35641 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2G2V1C7|A0A2G2V1C7_CAPBA Serine/threonine-protein kinase TOR OS=Capsicum baccatum OX=33114 GN=CQW23_33612 PE=4 SV=1
MM1 pKa = 7.08NGEE4 pKa = 4.11VRR6 pKa = 11.84WYY8 pKa = 9.31VSSRR12 pKa = 11.84FSFTLSLVGLVFIIDD27 pKa = 4.97CITYY31 pKa = 8.67ICVDD35 pKa = 3.2GVMVLDD41 pKa = 4.02EE42 pKa = 4.52FEE44 pKa = 5.0GYY46 pKa = 10.17INFMMMPDD54 pKa = 3.57KK55 pKa = 11.14SRR57 pKa = 11.84GYY59 pKa = 8.92MDD61 pKa = 5.71DD62 pKa = 2.92MMMPGDD68 pKa = 3.82SKK70 pKa = 11.5GYY72 pKa = 7.76TDD74 pKa = 5.23VMMVPNLFGGYY85 pKa = 9.14NDD87 pKa = 5.33DD88 pKa = 5.45MMMPDD93 pKa = 3.44NFVGYY98 pKa = 10.22VDD100 pKa = 6.49DD101 pKa = 5.73IMLPGNSKK109 pKa = 10.88GYY111 pKa = 9.76IDD113 pKa = 6.05DD114 pKa = 4.17VMIPDD119 pKa = 3.81KK120 pKa = 11.1FKK122 pKa = 11.06GYY124 pKa = 9.09TDD126 pKa = 5.02DD127 pKa = 5.77IYY129 pKa = 11.57VVWDD133 pKa = 3.61AVMDD137 pKa = 3.93SLLYY141 pKa = 10.65VLLGVLPDD149 pKa = 3.97GMGHH153 pKa = 6.96RR154 pKa = 11.84GNFGQRR160 pKa = 11.84AIQPKK165 pKa = 9.76

Molecular weight: 18.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2G2V2L8|A0A2G2V2L8_CAPBA Ethylene-responsive transcription factor 4 OS=Capsicum baccatum OX=33114 GN=CQW23_33169 PE=4 SV=1
MM1 pKa = 7.65APGHH5 pKa = 6.79HH6 pKa = 6.09GTKK9 pKa = 10.36APWRR13 pKa = 11.84HH14 pKa = 4.83ATVAPRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84GTMASGHH29 pKa = 6.54KK30 pKa = 9.1GTMTARR36 pKa = 11.84HH37 pKa = 5.91QGTVAPWHH45 pKa = 6.82RR46 pKa = 11.84GTKK49 pKa = 9.38AAWHH53 pKa = 6.6HH54 pKa = 5.22RR55 pKa = 11.84TKK57 pKa = 11.05APWHH61 pKa = 4.92QVGVQPWHH69 pKa = 6.38QGTMPPRR76 pKa = 11.84HH77 pKa = 6.81HH78 pKa = 7.17DD79 pKa = 3.24TVAPRR84 pKa = 11.84RR85 pKa = 11.84PCTLAPRR92 pKa = 11.84HH93 pKa = 6.28RR94 pKa = 11.84GTKK97 pKa = 8.84VAWHH101 pKa = 7.05HH102 pKa = 5.45GTVAPWHH109 pKa = 5.73QGTRR113 pKa = 11.84AAWHH117 pKa = 6.66HH118 pKa = 5.93GAMAPGHH125 pKa = 6.09QGTVAPRR132 pKa = 11.84WRR134 pKa = 11.84GTMAHH139 pKa = 6.28RR140 pKa = 11.84HH141 pKa = 5.91HH142 pKa = 6.59GTVAPWNPGTMAPWHH157 pKa = 6.76HH158 pKa = 6.14GTNASRR164 pKa = 11.84HH165 pKa = 5.12QGTVTPWHH173 pKa = 7.02HH174 pKa = 5.61GTVAPWHH181 pKa = 6.44RR182 pKa = 11.84GTRR185 pKa = 11.84ALRR188 pKa = 11.84HH189 pKa = 6.31HH190 pKa = 6.42GTMAPWHH197 pKa = 7.0HH198 pKa = 5.86GTMAPRR204 pKa = 11.84HH205 pKa = 6.08RR206 pKa = 11.84GLVAAA211 pKa = 5.66

Molecular weight: 23.51 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

35641

0

35641

13376091

28

5007

375.3

42.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.355 ± 0.012

1.907 ± 0.007

5.398 ± 0.011

6.437 ± 0.013

4.201 ± 0.008

6.369 ± 0.012

2.387 ± 0.005

5.587 ± 0.01

6.303 ± 0.011

9.798 ± 0.015

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.497 ± 0.006

4.644 ± 0.009

4.837 ± 0.015

3.555 ± 0.008

5.232 ± 0.011

8.777 ± 0.014

4.93 ± 0.008

6.554 ± 0.01

1.293 ± 0.005

2.925 ± 0.007
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski