Absicoccus porci

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Absicoccus

Average proteome isoelectric point is 6.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2184 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3N0I2W6|A0A3N0I2W6_9FIRM SGNH_hydro domain-containing protein OS=Absicoccus porci OX=2486576 GN=EDX97_02030 PE=4 SV=1
MM1 pKa = 7.55EE2 pKa = 4.98VNCDD6 pKa = 3.45MDD8 pKa = 4.4LKK10 pKa = 10.26PYY12 pKa = 10.9SKK14 pKa = 8.12TTIVNDD20 pKa = 4.0DD21 pKa = 3.27SDD23 pKa = 3.97MTLLINKK30 pKa = 8.58FYY32 pKa = 10.94ALPQGYY38 pKa = 9.32EE39 pKa = 3.78PDD41 pKa = 3.82DD42 pKa = 3.73LVTIKK47 pKa = 10.63DD48 pKa = 3.79YY49 pKa = 11.68ACVQGEE55 pKa = 4.64DD56 pKa = 4.33YY57 pKa = 11.19SCQDD61 pKa = 3.01VSEE64 pKa = 4.2LTLRR68 pKa = 11.84KK69 pKa = 9.68

Molecular weight: 7.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3N0I0I5|A0A3N0I0I5_9FIRM ATP-dependent zinc metalloprotease FtsH OS=Absicoccus porci OX=2486576 GN=hflB PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.2QPSKK9 pKa = 10.05KK10 pKa = 9.55KK11 pKa = 9.75HH12 pKa = 4.68QRR14 pKa = 11.84THH16 pKa = 5.24GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.22GGRR28 pKa = 11.84KK29 pKa = 9.07VLSSRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.71GRR39 pKa = 11.84KK40 pKa = 8.74VLSAA44 pKa = 4.05

Molecular weight: 5.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2184

0

2184

652579

32

2369

298.8

33.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.011 ± 0.059

1.487 ± 0.022

6.206 ± 0.043

6.353 ± 0.052

4.093 ± 0.044

6.341 ± 0.056

2.464 ± 0.027

7.817 ± 0.049

7.106 ± 0.051

8.63 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.166 ± 0.028

4.511 ± 0.036

3.404 ± 0.027

4.244 ± 0.039

3.877 ± 0.037

5.779 ± 0.044

5.666 ± 0.06

6.68 ± 0.043

0.969 ± 0.017

4.194 ± 0.036
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski