Bifidobacterium indicum LMG 11587 = DSM 20214

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; Bifidobacterium indicum

Average proteome isoelectric point is 6.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1350 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A087VTU1|A0A087VTU1_9BIFI Putative sugar ABC transporter substrate-binding protein OS=Bifidobacterium indicum LMG 11587 = DSM 20214 OX=1341694 GN=BINDI_0458 PE=4 SV=1
MM1 pKa = 7.13AQDD4 pKa = 3.51YY5 pKa = 10.09DD6 pKa = 3.88SPRR9 pKa = 11.84DD10 pKa = 3.45KK11 pKa = 11.62DD12 pKa = 3.48EE13 pKa = 5.66DD14 pKa = 3.93EE15 pKa = 5.11EE16 pKa = 4.52SLQEE20 pKa = 4.58LGKK23 pKa = 9.23TSQDD27 pKa = 2.96AGADD31 pKa = 3.61LDD33 pKa = 4.45DD34 pKa = 5.6DD35 pKa = 4.49EE36 pKa = 5.33NAIAEE41 pKa = 4.35DD42 pKa = 4.23YY43 pKa = 9.11EE44 pKa = 5.05LPGADD49 pKa = 4.92LSNEE53 pKa = 4.01DD54 pKa = 3.61SSVTVIPMQGDD65 pKa = 3.56EE66 pKa = 5.63FICSSCFLVKK76 pKa = 10.31HH77 pKa = 6.42RR78 pKa = 11.84SQLAYY83 pKa = 6.59TTPDD87 pKa = 3.21GQPVCKK93 pKa = 10.14EE94 pKa = 3.94CAAA97 pKa = 4.21

Molecular weight: 10.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A087VW84|A0A087VW84_9BIFI FAD:protein FMN transferase OS=Bifidobacterium indicum LMG 11587 = DSM 20214 OX=1341694 GN=BINDI_1334 PE=3 SV=1
MM1 pKa = 7.44KK2 pKa = 9.6RR3 pKa = 11.84TFQPNNRR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84HH13 pKa = 4.79MKK15 pKa = 9.36HH16 pKa = 5.81GFRR19 pKa = 11.84ARR21 pKa = 11.84MRR23 pKa = 11.84TRR25 pKa = 11.84SGRR28 pKa = 11.84ALINRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.08GRR39 pKa = 11.84KK40 pKa = 8.87SLSAA44 pKa = 3.86

Molecular weight: 5.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1350

0

1350

507539

29

2315

376.0

41.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.84 ± 0.065

0.841 ± 0.018

6.727 ± 0.061

5.536 ± 0.078

3.195 ± 0.043

8.682 ± 0.084

2.093 ± 0.029

5.168 ± 0.054

3.687 ± 0.058

9.262 ± 0.083

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.606 ± 0.036

2.948 ± 0.041

4.955 ± 0.048

4.014 ± 0.044

6.435 ± 0.063

6.571 ± 0.056

5.976 ± 0.088

7.556 ± 0.062

1.364 ± 0.03

2.543 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski