Halogeometricum pleomorphic virus 1

Taxonomy: Viruses; Monodnaviria; Trapavirae; Saleviricota; Huolimaviricetes; Haloruvirales; Pleolipoviridae; Betapleolipovirus; Betapleolipovirus HGPV1

Average proteome isoelectric point is 5.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 15 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|H9ABQ4|H9ABQ4_9VIRU VP3 OS=Halogeometricum pleomorphic virus 1 OX=1156722 GN=3 PE=4 SV=1
MM1 pKa = 7.61SKK3 pKa = 7.89MTIDD7 pKa = 4.11PEE9 pKa = 4.61DD10 pKa = 3.49VASTVATFIGTSSMAGIAQWSLFDD34 pKa = 4.95VSLSDD39 pKa = 4.72QAFQLAGNSVTLATVLTAVALAAIVFTNDD68 pKa = 2.71NGSIDD73 pKa = 3.94EE74 pKa = 4.4LHH76 pKa = 6.97AKK78 pKa = 9.53AKK80 pKa = 10.7KK81 pKa = 9.83LDD83 pKa = 3.16NYY85 pKa = 10.25YY86 pKa = 10.11YY87 pKa = 9.57YY88 pKa = 10.93SIVGSVALLVGWVFVGDD105 pKa = 3.46VSSFITSSDD114 pKa = 3.03LWGVGYY120 pKa = 10.49VAVSMVAHH128 pKa = 6.69FALGWMLL135 pKa = 3.96

Molecular weight: 14.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H9ABR1|H9ABR1_9VIRU ORF10 OS=Halogeometricum pleomorphic virus 1 OX=1156722 GN=ORF10 PE=4 SV=1
MM1 pKa = 7.67AKK3 pKa = 9.91NRR5 pKa = 11.84SKK7 pKa = 10.76KK8 pKa = 9.7AARR11 pKa = 11.84FGAFAEE17 pKa = 4.29RR18 pKa = 11.84AAFGRR23 pKa = 11.84YY24 pKa = 8.5GLEE27 pKa = 3.93PDD29 pKa = 3.3RR30 pKa = 11.84DD31 pKa = 3.73SWHH34 pKa = 7.44DD35 pKa = 3.25ARR37 pKa = 11.84DD38 pKa = 3.53RR39 pKa = 11.84DD40 pKa = 3.8GRR42 pKa = 11.84PWDD45 pKa = 3.78VKK47 pKa = 11.23ACMLSRR53 pKa = 11.84DD54 pKa = 3.62SARR57 pKa = 11.84FRR59 pKa = 11.84LWADD63 pKa = 2.78QHH65 pKa = 6.27SRR67 pKa = 11.84LRR69 pKa = 11.84SEE71 pKa = 3.83GGGYY75 pKa = 10.22VFVGYY80 pKa = 10.11LPRR83 pKa = 11.84GSGIQVKK90 pKa = 7.51QMRR93 pKa = 11.84TVRR96 pKa = 11.84AASITAEE103 pKa = 4.43FYY105 pKa = 9.92TAGNHH110 pKa = 6.63AKK112 pKa = 10.26GDD114 pKa = 3.7QLKK117 pKa = 9.74IPPRR121 pKa = 11.84AVFVRR126 pKa = 3.95

Molecular weight: 14.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

15

0

15

2950

58

544

196.7

21.51

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.102 ± 0.714

0.678 ± 0.207

7.729 ± 0.633

7.254 ± 0.589

3.288 ± 0.351

8.644 ± 0.448

2.034 ± 0.288

3.593 ± 0.275

3.322 ± 0.378

7.356 ± 0.39

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.203 ± 0.263

3.627 ± 0.878

3.695 ± 0.573

3.051 ± 0.229

6.102 ± 0.876

7.593 ± 0.729

6.949 ± 1.174

7.831 ± 0.629

1.695 ± 0.203

3.254 ± 0.431
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski