Paenibacillus yonginensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus

Average proteome isoelectric point is 6.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4173 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1B1N1N7|A0A1B1N1N7_9BACL SAF domain-containing protein OS=Paenibacillus yonginensis OX=1462996 GN=AWM70_12655 PE=4 SV=1
MM1 pKa = 7.08NWEE4 pKa = 3.74GAYY7 pKa = 10.5GKK9 pKa = 8.61TYY11 pKa = 10.1QVQVSQAEE19 pKa = 4.13QPGDD23 pKa = 4.11DD24 pKa = 5.65DD25 pKa = 3.47WTDD28 pKa = 2.98WYY30 pKa = 10.21TEE32 pKa = 3.8NAGNGGQDD40 pKa = 4.54LIFEE44 pKa = 4.58EE45 pKa = 4.65PAEE48 pKa = 3.97ARR50 pKa = 11.84YY51 pKa = 10.26VRR53 pKa = 11.84ILGTARR59 pKa = 11.84GTKK62 pKa = 9.79YY63 pKa = 10.68GYY65 pKa = 9.28SLWGMEE71 pKa = 4.72VYY73 pKa = 8.01GTPAGDD79 pKa = 3.43SGEE82 pKa = 4.22TGEE85 pKa = 6.06DD86 pKa = 3.49GDD88 pKa = 4.41NPGSGTADD96 pKa = 3.46PLAPPTLTADD106 pKa = 3.51TYY108 pKa = 11.91DD109 pKa = 3.47NYY111 pKa = 11.67ADD113 pKa = 3.86RR114 pKa = 11.84TT115 pKa = 3.98

Molecular weight: 12.46 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1B1N4S3|A0A1B1N4S3_9BACL Uncharacterized protein OS=Paenibacillus yonginensis OX=1462996 GN=AWM70_18990 PE=4 SV=1
MM1 pKa = 7.59KK2 pKa = 8.7PTFKK6 pKa = 10.81PNVSKK11 pKa = 10.8RR12 pKa = 11.84KK13 pKa = 8.95KK14 pKa = 8.25VHH16 pKa = 5.49GFRR19 pKa = 11.84KK20 pKa = 10.01RR21 pKa = 11.84MSTKK25 pKa = 10.18NGRR28 pKa = 11.84KK29 pKa = 8.87VLAARR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.2GRR39 pKa = 11.84KK40 pKa = 8.79VLSAA44 pKa = 4.05

Molecular weight: 5.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4173

0

4173

1336961

26

1897

320.4

35.59

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.599 ± 0.049

0.713 ± 0.01

5.036 ± 0.029

6.981 ± 0.052

4.045 ± 0.029

7.759 ± 0.037

1.993 ± 0.018

6.294 ± 0.035

5.283 ± 0.037

10.365 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.683 ± 0.018

3.654 ± 0.027

4.165 ± 0.025

4.037 ± 0.03

5.199 ± 0.036

6.296 ± 0.035

5.216 ± 0.029

7.017 ± 0.029

1.246 ± 0.015

3.421 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski