Ludwigia leaf distortion betasatellite [India:Amadalavalasa:Hibiscus:2007]

Taxonomy: Viruses; Tolecusatellitidae; Betasatellite; unclassified Betasatellite; Ludwigia leaf distortion betasatellite

Average proteome isoelectric point is 4.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B2CZA5|B2CZA5_9VIRU C1 protein OS=Ludwigia leaf distortion betasatellite [India:Amadalavalasa:Hibiscus:2007] OX=570832 PE=4 SV=1
MM1 pKa = 7.09TRR3 pKa = 11.84SGTNKK8 pKa = 9.11QGVRR12 pKa = 11.84FTVDD16 pKa = 2.69VRR18 pKa = 11.84LMEE21 pKa = 4.53DD22 pKa = 3.08MKK24 pKa = 11.02IFIHH28 pKa = 5.43MRR30 pKa = 11.84IVSTRR35 pKa = 11.84TPAIIKK41 pKa = 10.2YY42 pKa = 9.18EE43 pKa = 4.41GIVKK47 pKa = 8.12YY48 pKa = 9.0TYY50 pKa = 11.57GDD52 pKa = 3.39MQVPFDD58 pKa = 4.14FNGFEE63 pKa = 4.42GNIIANFLFANNEE76 pKa = 3.96AKK78 pKa = 10.14IEE80 pKa = 4.4EE81 pKa = 4.29IDD83 pKa = 4.38IEE85 pKa = 5.4DD86 pKa = 3.2IVQRR90 pKa = 11.84LDD92 pKa = 3.24ILVLEE97 pKa = 4.49NPEE100 pKa = 4.0ILGMDD105 pKa = 3.91VIEE108 pKa = 4.67PYY110 pKa = 10.87VFNKK114 pKa = 10.0KK115 pKa = 8.02FTVV118 pKa = 3.26

Molecular weight: 13.68 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B2CZA5|B2CZA5_9VIRU C1 protein OS=Ludwigia leaf distortion betasatellite [India:Amadalavalasa:Hibiscus:2007] OX=570832 PE=4 SV=1
MM1 pKa = 7.09TRR3 pKa = 11.84SGTNKK8 pKa = 9.11QGVRR12 pKa = 11.84FTVDD16 pKa = 2.69VRR18 pKa = 11.84LMEE21 pKa = 4.53DD22 pKa = 3.08MKK24 pKa = 11.02IFIHH28 pKa = 5.43MRR30 pKa = 11.84IVSTRR35 pKa = 11.84TPAIIKK41 pKa = 10.2YY42 pKa = 9.18EE43 pKa = 4.41GIVKK47 pKa = 8.12YY48 pKa = 9.0TYY50 pKa = 11.57GDD52 pKa = 3.39MQVPFDD58 pKa = 4.14FNGFEE63 pKa = 4.42GNIIANFLFANNEE76 pKa = 3.96AKK78 pKa = 10.14IEE80 pKa = 4.4EE81 pKa = 4.29IDD83 pKa = 4.38IEE85 pKa = 5.4DD86 pKa = 3.2IVQRR90 pKa = 11.84LDD92 pKa = 3.24ILVLEE97 pKa = 4.49NPEE100 pKa = 4.0ILGMDD105 pKa = 3.91VIEE108 pKa = 4.67PYY110 pKa = 10.87VFNKK114 pKa = 10.0KK115 pKa = 8.02FTVV118 pKa = 3.26

Molecular weight: 13.68 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

118

118

118

118.0

13.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.39 ± 0.0

0.0 ± 0.0

6.78 ± 0.0

8.475 ± 0.0

7.627 ± 0.0

5.932 ± 0.0

0.847 ± 0.0

12.712 ± 0.0

5.932 ± 0.0

5.085 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

5.085 ± 0.0

6.78 ± 0.0

3.39 ± 0.0

2.542 ± 0.0

5.085 ± 0.0

1.695 ± 0.0

5.932 ± 0.0

9.322 ± 0.0

0.0 ± 0.0

3.39 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski