Parapedobacter composti

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Parapedobacter

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3985 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I1M892|A0A1I1M892_9SPHI Uncharacterized protein OS=Parapedobacter composti OX=623281 GN=SAMN05421747_13015 PE=4 SV=1
MM1 pKa = 7.51NFQSLLPIFPAIAVALLFTACEE23 pKa = 4.0KK24 pKa = 11.04VVDD27 pKa = 4.12IDD29 pKa = 5.37LDD31 pKa = 3.82TAEE34 pKa = 4.6PRR36 pKa = 11.84LVIDD40 pKa = 5.51AAISWEE46 pKa = 4.04KK47 pKa = 9.87GTDD50 pKa = 3.41GANQRR55 pKa = 11.84IRR57 pKa = 11.84LSTTTDD63 pKa = 3.32YY64 pKa = 11.35YY65 pKa = 10.79ATEE68 pKa = 4.22IPPVSGATVQISNAAGQRR86 pKa = 11.84FDD88 pKa = 4.53FVEE91 pKa = 4.14NPGTGEE97 pKa = 4.01YY98 pKa = 10.44LCTDD102 pKa = 4.58FVPEE106 pKa = 3.65LHH108 pKa = 6.4GVYY111 pKa = 9.98EE112 pKa = 4.14LRR114 pKa = 11.84VTVGDD119 pKa = 3.62QVYY122 pKa = 7.94TATEE126 pKa = 3.86TLMPVPEE133 pKa = 4.05ITRR136 pKa = 11.84IEE138 pKa = 4.07QRR140 pKa = 11.84VLDD143 pKa = 3.71IFGDD147 pKa = 3.83NIEE150 pKa = 3.94VRR152 pKa = 11.84FYY154 pKa = 11.39FNDD157 pKa = 3.91DD158 pKa = 3.19GTAEE162 pKa = 4.02NYY164 pKa = 10.39YY165 pKa = 9.27LTEE168 pKa = 3.96IQTDD172 pKa = 4.19FLLFPSYY179 pKa = 11.31GLLDD183 pKa = 3.62NQYY186 pKa = 8.09TQGNEE191 pKa = 3.6LFQPFIDD198 pKa = 4.33EE199 pKa = 4.41EE200 pKa = 4.52LDD202 pKa = 3.56SGGEE206 pKa = 3.67IQMRR210 pKa = 11.84LSGISRR216 pKa = 11.84QFYY219 pKa = 10.89SFMALILAATGGNPFSTPPANIRR242 pKa = 11.84GNIVNQTDD250 pKa = 3.37AGNVALGYY258 pKa = 10.25FRR260 pKa = 11.84LSEE263 pKa = 4.43TDD265 pKa = 2.89TVTYY269 pKa = 10.5VVEE272 pKa = 4.16

Molecular weight: 30.2 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I1LVM5|A0A1I1LVM5_9SPHI Uncharacterized protein OS=Parapedobacter composti OX=623281 GN=SAMN05421747_12422 PE=4 SV=1
MM1 pKa = 7.49ILKK4 pKa = 9.26GCPKK8 pKa = 10.18GSPIVKK14 pKa = 10.12FEE16 pKa = 4.25IANCAYY22 pKa = 9.72PLSKK26 pKa = 10.5RR27 pKa = 11.84FNLSSNSAMYY37 pKa = 9.09FRR39 pKa = 11.84CRR41 pKa = 11.84DD42 pKa = 3.35IISPFLLTSGTRR54 pKa = 11.84PDD56 pKa = 3.6TYY58 pKa = 10.92KK59 pKa = 10.84SRR61 pKa = 11.84SSWAALTVLSRR72 pKa = 11.84FRR74 pKa = 11.84YY75 pKa = 8.91LGRR78 pKa = 11.84IFRR81 pKa = 4.47

Molecular weight: 9.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3985

0

3985

1421768

24

3900

356.8

39.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.472 ± 0.041

0.745 ± 0.01

5.577 ± 0.025

5.843 ± 0.036

4.57 ± 0.024

7.535 ± 0.035

2.2 ± 0.022

6.233 ± 0.037

4.965 ± 0.043

9.418 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.277 ± 0.019

4.745 ± 0.032

4.22 ± 0.023

3.794 ± 0.022

5.62 ± 0.029

5.76 ± 0.027

5.643 ± 0.036

6.855 ± 0.033

1.353 ± 0.018

4.175 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski