Faeces associated gemycircularvirus 17

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus chicas2; Chicken associated gemycircularvirus 2

Average proteome isoelectric point is 7.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A160HWK6|A0A160HWK6_9VIRU Capsid protein OS=Faeces associated gemycircularvirus 17 OX=1843737 PE=4 SV=1
MM1 pKa = 7.81PATSLLHH8 pKa = 5.51TRR10 pKa = 11.84SAVLLMSGPLTTILDD25 pKa = 3.9LLEE28 pKa = 5.63RR29 pKa = 11.84SVSWDD34 pKa = 3.3EE35 pKa = 4.64KK36 pKa = 10.16FMLMEE41 pKa = 4.04VLISMFSAISAEE53 pKa = 4.18SFDD56 pKa = 3.92PDD58 pKa = 3.41EE59 pKa = 5.69PISLMCRR66 pKa = 11.84VITQTSSDD74 pKa = 3.44LKK76 pKa = 9.38EE77 pKa = 3.83TLEE80 pKa = 4.21RR81 pKa = 11.84VRR83 pKa = 11.84VTQQKK88 pKa = 8.83MEE90 pKa = 4.28TLSPVGSPWNPCPLRR105 pKa = 11.84SFQALKK111 pKa = 10.52IRR113 pKa = 11.84GLRR116 pKa = 11.84SSAAKK121 pKa = 10.15VEE123 pKa = 4.38RR124 pKa = 11.84NFMRR128 pKa = 11.84LLTTSVRR135 pKa = 11.84GISSPDD141 pKa = 3.12LEE143 pKa = 5.4AFTHH147 pKa = 5.78TPSGSGLRR155 pKa = 11.84SAWATNVPPGSCLAMEE171 pKa = 6.05LFLTWLATEE180 pKa = 4.46RR181 pKa = 11.84EE182 pKa = 3.81FWMYY186 pKa = 10.13EE187 pKa = 3.59VSGSFGRR194 pKa = 11.84VKK196 pKa = 10.09TLVIYY201 pKa = 9.06GPPLTGKK208 pKa = 6.25TTWAQSLGNHH218 pKa = 5.91VYY220 pKa = 9.37MKK222 pKa = 9.72KK223 pKa = 8.63TFNAKK228 pKa = 9.31EE229 pKa = 3.8ASLCEE234 pKa = 4.24SKK236 pKa = 10.65DD237 pKa = 3.31YY238 pKa = 11.35CVIDD242 pKa = 5.38DD243 pKa = 3.72ISGGIKK249 pKa = 10.12FFPHH253 pKa = 5.15WKK255 pKa = 9.73DD256 pKa = 2.82WFGGQPYY263 pKa = 9.56VQIRR267 pKa = 11.84LLYY270 pKa = 10.03RR271 pKa = 11.84DD272 pKa = 3.99EE273 pKa = 5.47LLLRR277 pKa = 11.84WGKK280 pKa = 7.53PTIWLNNRR288 pKa = 11.84DD289 pKa = 3.78PRR291 pKa = 11.84DD292 pKa = 3.39QLRR295 pKa = 11.84DD296 pKa = 3.56MVGRR300 pKa = 11.84DD301 pKa = 3.72YY302 pKa = 11.65SDD304 pKa = 3.39EE305 pKa = 4.01QYY307 pKa = 11.48QNDD310 pKa = 4.55VEE312 pKa = 4.8WMDD315 pKa = 3.81ANCIFVYY322 pKa = 10.21VDD324 pKa = 3.3SPIVTFHH331 pKa = 7.16ANTEE335 pKa = 4.1

Molecular weight: 38.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A168MG03|A0A168MG03_9VIRU RepA OS=Faeces associated gemycircularvirus 17 OX=1843737 PE=4 SV=1
MM1 pKa = 7.91PYY3 pKa = 10.17QRR5 pKa = 11.84RR6 pKa = 11.84SYY8 pKa = 10.42SSRR11 pKa = 11.84ARR13 pKa = 11.84RR14 pKa = 11.84PTYY17 pKa = 9.22RR18 pKa = 11.84TARR21 pKa = 11.84PARR24 pKa = 11.84YY25 pKa = 7.18TRR27 pKa = 11.84NSYY30 pKa = 8.89SRR32 pKa = 11.84RR33 pKa = 11.84PTSRR37 pKa = 11.84RR38 pKa = 11.84TPIRR42 pKa = 11.84RR43 pKa = 11.84TYY45 pKa = 10.43RR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84STEE51 pKa = 3.11KK52 pKa = 7.8MPRR55 pKa = 11.84YY56 pKa = 8.51RR57 pKa = 11.84RR58 pKa = 11.84SYY60 pKa = 9.28RR61 pKa = 11.84RR62 pKa = 11.84RR63 pKa = 11.84RR64 pKa = 11.84PMTRR68 pKa = 11.84KK69 pKa = 10.06KK70 pKa = 10.2ILNLTSVKK78 pKa = 10.53KK79 pKa = 9.9QDD81 pKa = 3.56NMQLSSNVTAATPQGSATYY100 pKa = 8.61TNSAAVLPATQLYY113 pKa = 8.64IFPWIATARR122 pKa = 11.84DD123 pKa = 3.37LDD125 pKa = 4.07RR126 pKa = 11.84DD127 pKa = 3.64TGNIRR132 pKa = 11.84GAPSDD137 pKa = 3.69SATRR141 pKa = 11.84TAQTCYY147 pKa = 9.91MVGLRR152 pKa = 11.84EE153 pKa = 4.26NIEE156 pKa = 3.65ITTNDD161 pKa = 3.41GLPWQWRR168 pKa = 11.84RR169 pKa = 11.84ICFTFKK175 pKa = 10.65GSEE178 pKa = 4.09FTATSTTGLNYY189 pKa = 10.39YY190 pKa = 9.97LQTSNGMTRR199 pKa = 11.84TVNTAYY205 pKa = 10.44GSTAVGVLQSLLFKK219 pKa = 10.76GAAGVDD225 pKa = 3.33WSNTITAPTDD235 pKa = 3.09NTTISVKK242 pKa = 9.75YY243 pKa = 10.31DD244 pKa = 3.24RR245 pKa = 11.84TISIASGNEE254 pKa = 3.19QGTIRR259 pKa = 11.84RR260 pKa = 11.84YY261 pKa = 10.17RR262 pKa = 11.84RR263 pKa = 11.84FHH265 pKa = 6.47PMGHH269 pKa = 6.24NIIYY273 pKa = 10.52ADD275 pKa = 4.11DD276 pKa = 3.96EE277 pKa = 4.51QGGTEE282 pKa = 4.07SEE284 pKa = 4.59SFVSSRR290 pKa = 11.84GKK292 pKa = 9.8PGMGDD297 pKa = 3.54YY298 pKa = 10.92YY299 pKa = 11.12VIDD302 pKa = 3.42IFQPRR307 pKa = 11.84FGGTSASQLRR317 pKa = 11.84FEE319 pKa = 5.14PSATLYY325 pKa = 9.32WHH327 pKa = 6.99EE328 pKa = 4.35KK329 pKa = 9.3

Molecular weight: 37.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

916

252

335

305.3

34.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.441 ± 0.623

1.419 ± 0.36

4.258 ± 0.669

5.022 ± 0.879

3.712 ± 0.376

6.004 ± 0.341

1.31 ± 0.177

4.476 ± 0.351

3.275 ± 0.422

9.061 ± 2.011

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.384 ± 0.423

3.275 ± 0.594

5.895 ± 0.438

2.948 ± 0.519

8.952 ± 1.748

10.917 ± 1.263

9.061 ± 1.514

4.803 ± 0.759

2.511 ± 0.466

3.275 ± 1.303
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski