Yaba-like disease virus (YLDV)

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Yatapoxvirus; Tanapox virus

Average proteome isoelectric point is 7.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 150 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9DHI9|Q9DHI9_YLDV 124R protein OS=Yaba-like disease virus OX=132475 GN=124R PE=4 SV=1
MM1 pKa = 7.95IIPYY5 pKa = 9.96IIVSCSLIILIVYY18 pKa = 8.93LFLINKK24 pKa = 8.61KK25 pKa = 8.59YY26 pKa = 10.41CKK28 pKa = 10.18KK29 pKa = 10.33FLKK32 pKa = 10.41KK33 pKa = 10.01KK34 pKa = 9.88NKK36 pKa = 8.72PVCIEE41 pKa = 4.01LKK43 pKa = 10.69KK44 pKa = 9.69ITNTNKK50 pKa = 9.68TSTLNSEE57 pKa = 4.61DD58 pKa = 3.41WTDD61 pKa = 3.29MGSCEE66 pKa = 3.51IYY68 pKa = 11.19ANFRR72 pKa = 11.84SSKK75 pKa = 9.78RR76 pKa = 11.84EE77 pKa = 3.53KK78 pKa = 10.63SFKK81 pKa = 10.98LKK83 pKa = 10.71DD84 pKa = 3.49EE85 pKa = 4.29QQNSSSTSSSDD96 pKa = 3.5SEE98 pKa = 4.08FDD100 pKa = 3.42STINTDD106 pKa = 4.41DD107 pKa = 4.17EE108 pKa = 4.77SEE110 pKa = 4.09KK111 pKa = 11.14LNWDD115 pKa = 3.52NEE117 pKa = 4.37EE118 pKa = 3.79YY119 pKa = 10.45KK120 pKa = 10.6YY121 pKa = 11.02DD122 pKa = 3.79YY123 pKa = 10.66GKK125 pKa = 10.36SEE127 pKa = 4.05STVYY131 pKa = 10.72DD132 pKa = 4.25LPQDD136 pKa = 4.25NITEE140 pKa = 4.13DD141 pKa = 3.16TVYY144 pKa = 11.11DD145 pKa = 3.57VTDD148 pKa = 3.31NVEE151 pKa = 4.32NITYY155 pKa = 9.75DD156 pKa = 3.77LPQDD160 pKa = 3.98SIIYY164 pKa = 10.31DD165 pKa = 3.98LDD167 pKa = 3.83GKK169 pKa = 11.15SDD171 pKa = 3.48VAVYY175 pKa = 9.31DD176 pKa = 3.63IPEE179 pKa = 4.39SEE181 pKa = 4.63DD182 pKa = 3.32NVYY185 pKa = 10.99EE186 pKa = 4.13NNICLEE192 pKa = 4.06SCFDD196 pKa = 3.73DD197 pKa = 3.97VKK199 pKa = 11.51YY200 pKa = 11.05NSPLNNFNKK209 pKa = 10.24NYY211 pKa = 10.48YY212 pKa = 10.21SYY214 pKa = 9.77NTNDD218 pKa = 3.04FVSNVV223 pKa = 3.15

Molecular weight: 25.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9DHR7|Q9DHR7_YLDV 45L protein OS=Yaba-like disease virus OX=132475 GN=45L PE=4 SV=1
MM1 pKa = 7.49ALSTRR6 pKa = 11.84EE7 pKa = 3.79IFSAIGITCMALLMIVSGGALAFKK31 pKa = 10.48SLAPHH36 pKa = 6.49RR37 pKa = 11.84VISMRR42 pKa = 11.84SVTFNKK48 pKa = 9.88VITILEE54 pKa = 4.36YY55 pKa = 9.75IAILIFVPGTIALYY69 pKa = 9.93SAYY72 pKa = 9.58IKK74 pKa = 9.84TLIVGG79 pKa = 4.05

Molecular weight: 8.51 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

150

0

150

45790

53

1901

305.3

35.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

2.813 ± 0.121

2.16 ± 0.098

5.337 ± 0.125

5.364 ± 0.141

5.844 ± 0.121

3.542 ± 0.119

1.581 ± 0.081

10.29 ± 0.185

9.777 ± 0.18

9.292 ± 0.179

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.326 ± 0.083

8.812 ± 0.197

2.819 ± 0.095

2.018 ± 0.075

2.669 ± 0.099

7.938 ± 0.164

5.259 ± 0.131

6.283 ± 0.133

0.66 ± 0.044

5.215 ± 0.122
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski