Armatimonadetes bacterium Uphvl-Ar2

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Armatimonadetes; unclassified Armatimonadetes

Average proteome isoelectric point is 6.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2524 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Y0H9W7|A0A1Y0H9W7_9BACT Type-5 uracil-DNA glycosylase OS=Armatimonadetes bacterium Uphvl-Ar2 OX=2004468 GN=CCB81_11840 PE=3 SV=1
MM1 pKa = 7.73SITLTPRR8 pKa = 11.84ASQEE12 pKa = 3.88LRR14 pKa = 11.84DD15 pKa = 4.15LMTGQEE21 pKa = 4.42KK22 pKa = 10.56PNAHH26 pKa = 5.94LRR28 pKa = 11.84VWVAGGGCSGLSYY41 pKa = 11.19GMALDD46 pKa = 4.15EE47 pKa = 4.96NEE49 pKa = 4.77PDD51 pKa = 3.71ADD53 pKa = 4.0DD54 pKa = 5.86QIFEE58 pKa = 4.25CDD60 pKa = 3.36GVKK63 pKa = 10.44VVVDD67 pKa = 4.23AMSLQYY73 pKa = 10.26MGGSSVDD80 pKa = 3.66YY81 pKa = 10.66VDD83 pKa = 6.0DD84 pKa = 3.73MMGGGFKK91 pKa = 9.99IEE93 pKa = 4.5NPNATKK99 pKa = 10.8GCGCGSSFSTEE110 pKa = 4.4DD111 pKa = 3.53GPQGGGGCGSCGCASS126 pKa = 3.29

Molecular weight: 12.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Y0H5M7|A0A1Y0H5M7_9BACT Uncharacterized protein OS=Armatimonadetes bacterium Uphvl-Ar2 OX=2004468 GN=CCB81_00690 PE=4 SV=1
MM1 pKa = 7.44KK2 pKa = 9.6RR3 pKa = 11.84TFQPNNRR10 pKa = 11.84KK11 pKa = 9.4RR12 pKa = 11.84SKK14 pKa = 8.5THH16 pKa = 5.45GFRR19 pKa = 11.84IRR21 pKa = 11.84MRR23 pKa = 11.84TQDD26 pKa = 3.29GQNVLRR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.15GRR39 pKa = 11.84ARR41 pKa = 11.84LGAA44 pKa = 3.96

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2524

0

2524

792677

34

2299

314.1

34.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.773 ± 0.066

0.83 ± 0.017

5.395 ± 0.03

6.252 ± 0.05

3.61 ± 0.031

8.572 ± 0.047

2.003 ± 0.026

4.649 ± 0.031

3.271 ± 0.037

9.526 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.644 ± 0.024

3.125 ± 0.032

5.477 ± 0.038

3.785 ± 0.028

7.001 ± 0.044

5.433 ± 0.032

5.809 ± 0.04

7.702 ± 0.038

1.641 ± 0.023

2.5 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski