Asaia bogorensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Asaia

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3273 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A060QKR7|A0A060QKR7_9PROT FGGY_N domain-containing protein OS=Asaia bogorensis OX=91915 GN=ASAP_2101 PE=4 SV=1
MM1 pKa = 7.84NDD3 pKa = 2.66TSMNSVQIATDD14 pKa = 4.09PAAHH18 pKa = 7.27AYY20 pKa = 10.27AIIDD24 pKa = 3.46ASGEE28 pKa = 4.25VVNRR32 pKa = 11.84IVWDD36 pKa = 3.71GRR38 pKa = 11.84GNLILPTGQYY48 pKa = 8.49WVEE51 pKa = 4.51DD52 pKa = 4.03DD53 pKa = 4.04ASAYY57 pKa = 9.84PIGSTYY63 pKa = 10.57KK64 pKa = 10.79APTPTSGTAGG74 pKa = 3.28

Molecular weight: 7.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A060QCE0|A0A060QCE0_9PROT Oxidoreductase OS=Asaia bogorensis OX=91915 GN=ASAP_0744 PE=4 SV=1
MM1 pKa = 7.39RR2 pKa = 11.84RR3 pKa = 11.84AIVFVLSVSANQNVIVTNQVRR24 pKa = 11.84TLAFALRR31 pKa = 11.84GRR33 pKa = 11.84LHH35 pKa = 6.69HH36 pKa = 6.47ATPISS41 pKa = 3.35

Molecular weight: 4.56 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3273

0

3273

1008756

37

2114

308.2

33.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.834 ± 0.058

1.027 ± 0.014

5.537 ± 0.035

5.122 ± 0.044

3.495 ± 0.027

8.48 ± 0.04

2.494 ± 0.02

5.138 ± 0.028

2.767 ± 0.032

10.459 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.569 ± 0.021

2.697 ± 0.033

5.45 ± 0.033

3.594 ± 0.025

7.204 ± 0.046

6.044 ± 0.039

5.692 ± 0.036

6.743 ± 0.034

1.384 ± 0.017

2.255 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski