Colletotrichum incanum

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Hypocreomycetidae; Glomerellales;

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 12795 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A166LXT2|A0A166LXT2_9PEZI Uncharacterized protein OS=Colletotrichum incanum OX=1573173 GN=CI238_04498 PE=4 SV=1
MM1 pKa = 7.22QPPISINYY9 pKa = 8.69QPALDD14 pKa = 3.68ATTIQLSASLGQSDD28 pKa = 4.77ALDD31 pKa = 3.62SAILNLGLPYY41 pKa = 10.21VANSGEE47 pKa = 3.83LSIRR51 pKa = 11.84VDD53 pKa = 4.03FNRR56 pKa = 11.84LFLPCYY62 pKa = 9.66TIVNLGLEE70 pKa = 4.29EE71 pKa = 4.75LNFVLGSSQLKK82 pKa = 10.47GLLLEE87 pKa = 4.74AFFDD91 pKa = 4.22LSEE94 pKa = 4.0

Molecular weight: 10.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A161VZB4|A0A161VZB4_9PEZI Secreted aspartic proteinase (Fragment) OS=Colletotrichum incanum OX=1573173 GN=CI238_06855 PE=3 SV=1
LL1 pKa = 7.21VVTPRR6 pKa = 11.84RR7 pKa = 11.84VPTSSRR13 pKa = 11.84PVAPSATPSRR23 pKa = 11.84RR24 pKa = 11.84TAATRR29 pKa = 11.84SALPCTASGAARR41 pKa = 11.84LAPSRR46 pKa = 11.84ATPTPTPTSRR56 pKa = 11.84RR57 pKa = 11.84ASSGTTRR64 pKa = 11.84PSLSTSRR71 pKa = 11.84TPRR74 pKa = 11.84STSLAPRR81 pKa = 11.84WPSVVSRR88 pKa = 11.84RR89 pKa = 11.84RR90 pKa = 11.84RR91 pKa = 11.84TATTSLPTSRR101 pKa = 11.84TLPNRR106 pKa = 11.84RR107 pKa = 11.84IDD109 pKa = 3.41VV110 pKa = 3.55

Molecular weight: 11.68 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12795

0

12795

6394483

8

12266

499.8

55.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.958 ± 0.019

1.27 ± 0.009

5.605 ± 0.013

5.928 ± 0.02

3.778 ± 0.014

7.011 ± 0.022

2.365 ± 0.011

4.778 ± 0.014

4.79 ± 0.02

8.819 ± 0.023

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.158 ± 0.008

3.7 ± 0.012

6.161 ± 0.026

3.936 ± 0.017

6.068 ± 0.019

8.075 ± 0.027

6.085 ± 0.024

6.286 ± 0.017

1.523 ± 0.009

2.705 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski