Amino acid dipepetide frequency for Vicia faba endornavirus (VfEV)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.949AlaAla: 3.949 ± 0.0
1.374AlaCys: 1.374 ± 0.0
3.949AlaAsp: 3.949 ± 0.0
2.404AlaGlu: 2.404 ± 0.0
1.03AlaPhe: 1.03 ± 0.0
3.091AlaGly: 3.091 ± 0.0
0.687AlaHis: 0.687 ± 0.0
3.949AlaIle: 3.949 ± 0.0
3.262AlaLys: 3.262 ± 0.0
5.495AlaLeu: 5.495 ± 0.0
2.919AlaMet: 2.919 ± 0.0
3.606AlaAsn: 3.606 ± 0.0
2.404AlaPro: 2.404 ± 0.0
2.747AlaGln: 2.747 ± 0.0
3.606AlaArg: 3.606 ± 0.0
4.293AlaSer: 4.293 ± 0.0
4.979AlaThr: 4.979 ± 0.0
4.293AlaVal: 4.293 ± 0.0
0.859AlaTrp: 0.859 ± 0.0
2.747AlaTyr: 2.747 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.545CysAla: 1.545 ± 0.0
1.202CysCys: 1.202 ± 0.0
0.859CysAsp: 0.859 ± 0.0
1.717CysGlu: 1.717 ± 0.0
0.515CysPhe: 0.515 ± 0.0
2.576CysGly: 2.576 ± 0.0
0.687CysHis: 0.687 ± 0.0
0.859CysIle: 0.859 ± 0.0
1.717CysLys: 1.717 ± 0.0
1.545CysLeu: 1.545 ± 0.0
0.515CysMet: 0.515 ± 0.0
0.343CysAsn: 0.343 ± 0.0
1.03CysPro: 1.03 ± 0.0
0.859CysGln: 0.859 ± 0.0
0.687CysArg: 0.687 ± 0.0
2.232CysSer: 2.232 ± 0.0
1.03CysThr: 1.03 ± 0.0
2.404CysVal: 2.404 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.687CysTyr: 0.687 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.606AspAla: 3.606 ± 0.0
0.687AspCys: 0.687 ± 0.0
2.576AspAsp: 2.576 ± 0.0
2.576AspGlu: 2.576 ± 0.0
2.232AspPhe: 2.232 ± 0.0
2.747AspGly: 2.747 ± 0.0
1.717AspHis: 1.717 ± 0.0
4.121AspIle: 4.121 ± 0.0
2.919AspLys: 2.919 ± 0.0
5.838AspLeu: 5.838 ± 0.0
1.545AspMet: 1.545 ± 0.0
3.434AspAsn: 3.434 ± 0.0
2.576AspPro: 2.576 ± 0.0
1.374AspGln: 1.374 ± 0.0
2.747AspArg: 2.747 ± 0.0
3.262AspSer: 3.262 ± 0.0
2.919AspThr: 2.919 ± 0.0
2.747AspVal: 2.747 ± 0.0
1.202AspTrp: 1.202 ± 0.0
1.889AspTyr: 1.889 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
4.979GluAla: 4.979 ± 0.0
1.717GluCys: 1.717 ± 0.0
2.232GluAsp: 2.232 ± 0.0
3.434GluGlu: 3.434 ± 0.0
2.06GluPhe: 2.06 ± 0.0
1.889GluGly: 1.889 ± 0.0
2.232GluHis: 2.232 ± 0.0
4.293GluIle: 4.293 ± 0.0
4.464GluLys: 4.464 ± 0.0
5.838GluLeu: 5.838 ± 0.0
1.717GluMet: 1.717 ± 0.0
3.777GluAsn: 3.777 ± 0.0
2.747GluPro: 2.747 ± 0.0
1.889GluGln: 1.889 ± 0.0
3.262GluArg: 3.262 ± 0.0
4.293GluSer: 4.293 ± 0.0
3.949GluThr: 3.949 ± 0.0
3.434GluVal: 3.434 ± 0.0
0.515GluTrp: 0.515 ± 0.0
1.03GluTyr: 1.03 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
1.202PheAla: 1.202 ± 0.0
1.03PheCys: 1.03 ± 0.0
1.889PheAsp: 1.889 ± 0.0
1.545PheGlu: 1.545 ± 0.0
0.515PhePhe: 0.515 ± 0.0
1.889PheGly: 1.889 ± 0.0
0.515PheHis: 0.515 ± 0.0
0.515PheIle: 0.515 ± 0.0
2.06PheLys: 2.06 ± 0.0
1.545PheLeu: 1.545 ± 0.0
0.687PheMet: 0.687 ± 0.0
2.576PheAsn: 2.576 ± 0.0
0.172PhePro: 0.172 ± 0.0
0.515PheGln: 0.515 ± 0.0
1.717PheArg: 1.717 ± 0.0
1.717PheSer: 1.717 ± 0.0
1.889PheThr: 1.889 ± 0.0
2.232PheVal: 2.232 ± 0.0
0.0PheTrp: 0.0 ± 0.0
0.687PheTyr: 0.687 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
3.091GlyAla: 3.091 ± 0.0
0.515GlyCys: 0.515 ± 0.0
3.777GlyAsp: 3.777 ± 0.0
3.262GlyGlu: 3.262 ± 0.0
1.374GlyPhe: 1.374 ± 0.0
4.121GlyGly: 4.121 ± 0.0
1.717GlyHis: 1.717 ± 0.0
4.636GlyIle: 4.636 ± 0.0
3.434GlyLys: 3.434 ± 0.0
4.808GlyLeu: 4.808 ± 0.0
2.06GlyMet: 2.06 ± 0.0
3.777GlyAsn: 3.777 ± 0.0
1.717GlyPro: 1.717 ± 0.0
1.889GlyGln: 1.889 ± 0.0
2.404GlyArg: 2.404 ± 0.0
4.636GlySer: 4.636 ± 0.0
3.606GlyThr: 3.606 ± 0.0
3.949GlyVal: 3.949 ± 0.0
0.859GlyTrp: 0.859 ± 0.0
1.545GlyTyr: 1.545 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
1.717HisAla: 1.717 ± 0.0
1.202HisCys: 1.202 ± 0.0
1.374HisAsp: 1.374 ± 0.0
2.06HisGlu: 2.06 ± 0.0
0.515HisPhe: 0.515 ± 0.0
0.687HisGly: 0.687 ± 0.0
1.202HisHis: 1.202 ± 0.0
1.03HisIle: 1.03 ± 0.0
1.717HisLys: 1.717 ± 0.0
2.404HisLeu: 2.404 ± 0.0
0.687HisMet: 0.687 ± 0.0
2.06HisAsn: 2.06 ± 0.0
0.859HisPro: 0.859 ± 0.0
1.202HisGln: 1.202 ± 0.0
2.232HisArg: 2.232 ± 0.0
1.374HisSer: 1.374 ± 0.0
2.576HisThr: 2.576 ± 0.0
1.889HisVal: 1.889 ± 0.0
0.515HisTrp: 0.515 ± 0.0
1.03HisTyr: 1.03 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.434IleAla: 3.434 ± 0.0
1.03IleCys: 1.03 ± 0.0
2.747IleAsp: 2.747 ± 0.0
3.262IleGlu: 3.262 ± 0.0
0.687IlePhe: 0.687 ± 0.0
3.434IleGly: 3.434 ± 0.0
1.545IleHis: 1.545 ± 0.0
2.576IleIle: 2.576 ± 0.0
3.949IleLys: 3.949 ± 0.0
5.151IleLeu: 5.151 ± 0.0
1.202IleMet: 1.202 ± 0.0
2.919IleAsn: 2.919 ± 0.0
2.747IlePro: 2.747 ± 0.0
2.747IleGln: 2.747 ± 0.0
2.747IleArg: 2.747 ± 0.0
3.262IleSer: 3.262 ± 0.0
6.525IleThr: 6.525 ± 0.0
3.606IleVal: 3.606 ± 0.0
0.343IleTrp: 0.343 ± 0.0
1.889IleTyr: 1.889 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
4.121LysAla: 4.121 ± 0.0
0.859LysCys: 0.859 ± 0.0
1.889LysAsp: 1.889 ± 0.0
3.949LysGlu: 3.949 ± 0.0
1.374LysPhe: 1.374 ± 0.0
3.434LysGly: 3.434 ± 0.0
1.717LysHis: 1.717 ± 0.0
3.434LysIle: 3.434 ± 0.0
4.808LysLys: 4.808 ± 0.0
5.838LysLeu: 5.838 ± 0.0
2.06LysMet: 2.06 ± 0.0
3.434LysAsn: 3.434 ± 0.0
4.293LysPro: 4.293 ± 0.0
2.404LysGln: 2.404 ± 0.0
2.747LysArg: 2.747 ± 0.0
4.636LysSer: 4.636 ± 0.0
3.777LysThr: 3.777 ± 0.0
5.666LysVal: 5.666 ± 0.0
0.859LysTrp: 0.859 ± 0.0
2.576LysTyr: 2.576 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
5.666LeuAla: 5.666 ± 0.0
2.06LeuCys: 2.06 ± 0.0
6.696LeuAsp: 6.696 ± 0.0
7.727LeuGlu: 7.727 ± 0.0
1.717LeuPhe: 1.717 ± 0.0
4.464LeuGly: 4.464 ± 0.0
3.091LeuHis: 3.091 ± 0.0
3.777LeuIle: 3.777 ± 0.0
7.555LeuLys: 7.555 ± 0.0
5.495LeuLeu: 5.495 ± 0.0
3.091LeuMet: 3.091 ± 0.0
3.606LeuAsn: 3.606 ± 0.0
2.576LeuPro: 2.576 ± 0.0
3.091LeuGln: 3.091 ± 0.0
5.838LeuArg: 5.838 ± 0.0
4.464LeuSer: 4.464 ± 0.0
7.898LeuThr: 7.898 ± 0.0
4.979LeuVal: 4.979 ± 0.0
0.859LeuTrp: 0.859 ± 0.0
3.262LeuTyr: 3.262 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
1.717MetAla: 1.717 ± 0.0
1.202MetCys: 1.202 ± 0.0
0.687MetAsp: 0.687 ± 0.0
1.889MetGlu: 1.889 ± 0.0
0.859MetPhe: 0.859 ± 0.0
2.576MetGly: 2.576 ± 0.0
0.687MetHis: 0.687 ± 0.0
1.717MetIle: 1.717 ± 0.0
1.889MetLys: 1.889 ± 0.0
4.636MetLeu: 4.636 ± 0.0
1.03MetMet: 1.03 ± 0.0
2.576MetAsn: 2.576 ± 0.0
1.03MetPro: 1.03 ± 0.0
1.202MetGln: 1.202 ± 0.0
1.03MetArg: 1.03 ± 0.0
2.919MetSer: 2.919 ± 0.0
1.202MetThr: 1.202 ± 0.0
1.545MetVal: 1.545 ± 0.0
0.343MetTrp: 0.343 ± 0.0
0.859MetTyr: 0.859 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.091AsnAla: 3.091 ± 0.0
0.859AsnCys: 0.859 ± 0.0
3.434AsnAsp: 3.434 ± 0.0
3.777AsnGlu: 3.777 ± 0.0
1.889AsnPhe: 1.889 ± 0.0
1.889AsnGly: 1.889 ± 0.0
1.717AsnHis: 1.717 ± 0.0
4.293AsnIle: 4.293 ± 0.0
3.949AsnLys: 3.949 ± 0.0
5.666AsnLeu: 5.666 ± 0.0
2.06AsnMet: 2.06 ± 0.0
4.121AsnAsn: 4.121 ± 0.0
3.777AsnPro: 3.777 ± 0.0
2.404AsnGln: 2.404 ± 0.0
3.091AsnArg: 3.091 ± 0.0
4.121AsnSer: 4.121 ± 0.0
6.01AsnThr: 6.01 ± 0.0
4.464AsnVal: 4.464 ± 0.0
0.687AsnTrp: 0.687 ± 0.0
2.06AsnTyr: 2.06 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
2.404ProAla: 2.404 ± 0.0
1.374ProCys: 1.374 ± 0.0
2.404ProAsp: 2.404 ± 0.0
3.434ProGlu: 3.434 ± 0.0
1.202ProPhe: 1.202 ± 0.0
3.434ProGly: 3.434 ± 0.0
0.859ProHis: 0.859 ± 0.0
3.091ProIle: 3.091 ± 0.0
1.545ProLys: 1.545 ± 0.0
2.747ProLeu: 2.747 ± 0.0
2.232ProMet: 2.232 ± 0.0
2.404ProAsn: 2.404 ± 0.0
2.576ProPro: 2.576 ± 0.0
1.545ProGln: 1.545 ± 0.0
1.889ProArg: 1.889 ± 0.0
2.747ProSer: 2.747 ± 0.0
4.121ProThr: 4.121 ± 0.0
2.747ProVal: 2.747 ± 0.0
0.515ProTrp: 0.515 ± 0.0
1.03ProTyr: 1.03 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
3.262GlnAla: 3.262 ± 0.0
1.03GlnCys: 1.03 ± 0.0
1.889GlnAsp: 1.889 ± 0.0
1.545GlnGlu: 1.545 ± 0.0
0.515GlnPhe: 0.515 ± 0.0
2.576GlnGly: 2.576 ± 0.0
1.545GlnHis: 1.545 ± 0.0
1.717GlnIle: 1.717 ± 0.0
2.232GlnLys: 2.232 ± 0.0
4.121GlnLeu: 4.121 ± 0.0
0.343GlnMet: 0.343 ± 0.0
1.889GlnAsn: 1.889 ± 0.0
1.545GlnPro: 1.545 ± 0.0
1.374GlnGln: 1.374 ± 0.0
1.374GlnArg: 1.374 ± 0.0
3.262GlnSer: 3.262 ± 0.0
3.606GlnThr: 3.606 ± 0.0
3.091GlnVal: 3.091 ± 0.0
0.687GlnTrp: 0.687 ± 0.0
1.03GlnTyr: 1.03 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
3.777ArgAla: 3.777 ± 0.0
1.03ArgCys: 1.03 ± 0.0
2.404ArgAsp: 2.404 ± 0.0
3.091ArgGlu: 3.091 ± 0.0
2.232ArgPhe: 2.232 ± 0.0
1.545ArgGly: 1.545 ± 0.0
1.717ArgHis: 1.717 ± 0.0
3.262ArgIle: 3.262 ± 0.0
3.262ArgLys: 3.262 ± 0.0
4.636ArgLeu: 4.636 ± 0.0
1.202ArgMet: 1.202 ± 0.0
3.262ArgAsn: 3.262 ± 0.0
2.232ArgPro: 2.232 ± 0.0
2.404ArgGln: 2.404 ± 0.0
4.121ArgArg: 4.121 ± 0.0
2.747ArgSer: 2.747 ± 0.0
2.404ArgThr: 2.404 ± 0.0
4.979ArgVal: 4.979 ± 0.0
0.859ArgTrp: 0.859 ± 0.0
1.374ArgTyr: 1.374 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
4.121SerAla: 4.121 ± 0.0
1.545SerCys: 1.545 ± 0.0
3.606SerAsp: 3.606 ± 0.0
4.636SerGlu: 4.636 ± 0.0
2.06SerPhe: 2.06 ± 0.0
3.949SerGly: 3.949 ± 0.0
1.717SerHis: 1.717 ± 0.0
2.747SerIle: 2.747 ± 0.0
3.606SerLys: 3.606 ± 0.0
4.979SerLeu: 4.979 ± 0.0
1.889SerMet: 1.889 ± 0.0
4.979SerAsn: 4.979 ± 0.0
3.091SerPro: 3.091 ± 0.0
2.576SerGln: 2.576 ± 0.0
4.121SerArg: 4.121 ± 0.0
4.293SerSer: 4.293 ± 0.0
5.495SerThr: 5.495 ± 0.0
4.121SerVal: 4.121 ± 0.0
1.374SerTrp: 1.374 ± 0.0
2.232SerTyr: 2.232 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
4.464ThrAla: 4.464 ± 0.0
1.545ThrCys: 1.545 ± 0.0
3.262ThrAsp: 3.262 ± 0.0
4.464ThrGlu: 4.464 ± 0.0
1.889ThrPhe: 1.889 ± 0.0
6.181ThrGly: 6.181 ± 0.0
2.232ThrHis: 2.232 ± 0.0
3.606ThrIle: 3.606 ± 0.0
4.464ThrLys: 4.464 ± 0.0
6.525ThrLeu: 6.525 ± 0.0
1.717ThrMet: 1.717 ± 0.0
6.181ThrAsn: 6.181 ± 0.0
5.323ThrPro: 5.323 ± 0.0
4.808ThrGln: 4.808 ± 0.0
3.434ThrArg: 3.434 ± 0.0
5.323ThrSer: 5.323 ± 0.0
6.696ThrThr: 6.696 ± 0.0
2.576ThrVal: 2.576 ± 0.0
0.859ThrTrp: 0.859 ± 0.0
1.03ThrTyr: 1.03 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
2.919ValAla: 2.919 ± 0.0
1.374ValCys: 1.374 ± 0.0
4.121ValAsp: 4.121 ± 0.0
2.919ValGlu: 2.919 ± 0.0
1.545ValPhe: 1.545 ± 0.0
3.606ValGly: 3.606 ± 0.0
1.202ValHis: 1.202 ± 0.0
4.464ValIle: 4.464 ± 0.0
4.464ValLys: 4.464 ± 0.0
6.525ValLeu: 6.525 ± 0.0
3.091ValMet: 3.091 ± 0.0
5.323ValAsn: 5.323 ± 0.0
2.404ValPro: 2.404 ± 0.0
1.889ValGln: 1.889 ± 0.0
2.919ValArg: 2.919 ± 0.0
4.121ValSer: 4.121 ± 0.0
5.838ValThr: 5.838 ± 0.0
3.949ValVal: 3.949 ± 0.0
1.202ValTrp: 1.202 ± 0.0
2.404ValTyr: 2.404 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.515TrpAla: 0.515 ± 0.0
0.687TrpCys: 0.687 ± 0.0
0.859TrpAsp: 0.859 ± 0.0
0.859TrpGlu: 0.859 ± 0.0
0.515TrpPhe: 0.515 ± 0.0
0.343TrpGly: 0.343 ± 0.0
0.515TrpHis: 0.515 ± 0.0
0.343TrpIle: 0.343 ± 0.0
0.859TrpLys: 0.859 ± 0.0
1.545TrpLeu: 1.545 ± 0.0
0.687TrpMet: 0.687 ± 0.0
0.859TrpAsn: 0.859 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.515TrpGln: 0.515 ± 0.0
1.03TrpArg: 1.03 ± 0.0
1.202TrpSer: 1.202 ± 0.0
0.172TrpThr: 0.172 ± 0.0
0.687TrpVal: 0.687 ± 0.0
0.687TrpTrp: 0.687 ± 0.0
0.515TrpTyr: 0.515 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.06TyrAla: 2.06 ± 0.0
0.687TyrCys: 0.687 ± 0.0
2.06TyrAsp: 2.06 ± 0.0
1.202TyrGlu: 1.202 ± 0.0
0.172TyrPhe: 0.172 ± 0.0
2.747TyrGly: 2.747 ± 0.0
1.03TyrHis: 1.03 ± 0.0
1.374TyrIle: 1.374 ± 0.0
1.717TyrLys: 1.717 ± 0.0
2.576TyrLeu: 2.576 ± 0.0
0.687TyrMet: 0.687 ± 0.0
2.232TyrAsn: 2.232 ± 0.0
1.202TyrPro: 1.202 ± 0.0
1.202TyrGln: 1.202 ± 0.0
1.717TyrArg: 1.717 ± 0.0
2.232TyrSer: 2.232 ± 0.0
1.889TyrThr: 1.889 ± 0.0
2.919TyrVal: 2.919 ± 0.0
0.172TyrTrp: 0.172 ± 0.0
1.202TyrTyr: 1.202 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (5825 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski