Niabella soli DSM 19437

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; Niabella; Niabella soli

Average proteome isoelectric point is 7.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4110 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W0F6P7|W0F6P7_9BACT Uncharacterized protein OS=Niabella soli DSM 19437 OX=929713 GN=NIASO_08850 PE=4 SV=1
MM1 pKa = 8.03DD2 pKa = 4.29IEE4 pKa = 5.21LYY6 pKa = 8.82VHH8 pKa = 6.93AVFVCSDD15 pKa = 3.25AGNNDD20 pKa = 3.44ILPSAAAGSGLPEE33 pKa = 5.27DD34 pKa = 5.2DD35 pKa = 4.92GDD37 pKa = 4.71IEE39 pKa = 4.29EE40 pKa = 4.04QSIRR44 pKa = 11.84CSPTSPQPSPLNQPP58 pKa = 3.43

Molecular weight: 6.07 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W0F8Y2|W0F8Y2_9BACT Uncharacterized protein OS=Niabella soli DSM 19437 OX=929713 GN=NIASO_14900 PE=4 SV=1
MM1 pKa = 7.56VFDD4 pKa = 5.34EE5 pKa = 5.95GPQQVQCWGFFLPIMLIMTNNAQLRR30 pKa = 11.84LHH32 pKa = 7.05KK33 pKa = 9.99KK34 pKa = 10.03RR35 pKa = 11.84KK36 pKa = 8.13IFEE39 pKa = 4.15NRR41 pKa = 11.84RR42 pKa = 11.84SACNYY47 pKa = 8.95ARR49 pKa = 11.84NGFIWTGFDD58 pKa = 3.56AVILRR63 pKa = 11.84LPLQWQHH70 pKa = 5.87RR71 pKa = 11.84QGQITTVVAA80 pKa = 4.14

Molecular weight: 9.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4110

0

4110

1373064

29

2870

334.1

37.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.237 ± 0.039

0.846 ± 0.012

5.17 ± 0.022

5.311 ± 0.041

4.835 ± 0.027

7.184 ± 0.034

1.885 ± 0.018

6.791 ± 0.03

6.935 ± 0.033

9.423 ± 0.034

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.311 ± 0.014

5.347 ± 0.038

4.164 ± 0.021

3.876 ± 0.02

4.242 ± 0.025

5.868 ± 0.028

5.799 ± 0.025

6.319 ± 0.024

1.371 ± 0.015

4.086 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski