Lichtheimia corymbifera JMRC:FSU:9682

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; Mucoromycota; Mucoromycotina; Mucoromycetes; Mucorales; Lichtheimiaceae; Lichtheimia; Lichtheimia corymbifera

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13257 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A068SC33|A0A068SC33_9FUNG Uncharacterized protein OS=Lichtheimia corymbifera JMRC:FSU:9682 OX=1263082 GN=LCOR_10216.1 PE=4 SV=1
MM1 pKa = 7.86RR2 pKa = 11.84LLILLLILALAAMVFAQDD20 pKa = 3.92PGAGDD25 pKa = 3.54SGTGDD30 pKa = 3.29GVGGDD35 pKa = 3.71TGGDD39 pKa = 3.32TGSDD43 pKa = 3.28GSTGGDD49 pKa = 3.24GSTGAGDD56 pKa = 3.74GTTGGDD62 pKa = 3.24SGTGGGDD69 pKa = 3.09TSTGGDD75 pKa = 3.57GSTGGDD81 pKa = 3.44GSTGGDD87 pKa = 3.44GSTGGDD93 pKa = 3.41GSTGGGDD100 pKa = 3.32AGTGDD105 pKa = 4.11GSTGGDD111 pKa = 3.44TQQPSDD117 pKa = 4.85DD118 pKa = 4.46GSTTPNPTGDD128 pKa = 3.77GTTSPSPSDD137 pKa = 4.99DD138 pKa = 3.33GTTDD142 pKa = 3.31PQQPTDD148 pKa = 3.53QPSDD152 pKa = 3.17GGEE155 pKa = 3.98QQQPSPTDD163 pKa = 3.47PEE165 pKa = 4.32TAPDD169 pKa = 3.76ATPSGDD175 pKa = 3.75TVDD178 pKa = 4.54EE179 pKa = 4.55AACQALKK186 pKa = 10.56QIYY189 pKa = 10.16NSLNGNSWTVSNGWSGDD206 pKa = 3.76DD207 pKa = 3.75MTSCCNGWFGVSCIMGSVSKK227 pKa = 10.71IQLPYY232 pKa = 10.91NNLAGEE238 pKa = 4.32LPDD241 pKa = 4.17VFGSLQSLTNLDD253 pKa = 3.89LSHH256 pKa = 6.22NQISGSLPGSLTNMPNLRR274 pKa = 11.84FINVDD279 pKa = 3.41VNNLSGGLIAFGQTPMLQSIHH300 pKa = 6.03MKK302 pKa = 10.15NNSFTGSIPDD312 pKa = 2.89SWGNIGTLNDD322 pKa = 3.57IYY324 pKa = 11.12LSNNQLSGPFPMSILNLGQLTTLAIDD350 pKa = 3.35NNQFNGIVPPQIGNLGSLKK369 pKa = 10.48VLNIRR374 pKa = 11.84QNHH377 pKa = 5.85LLGNIPASIGNLTSLTNLLMSDD399 pKa = 3.18MMLNGTIPEE408 pKa = 4.17SLYY411 pKa = 11.21GLSNLQYY418 pKa = 11.25LDD420 pKa = 4.11LSHH423 pKa = 6.78NRR425 pKa = 11.84LTGEE429 pKa = 3.91ISDD432 pKa = 4.95KK433 pKa = 10.96LGQLVNVKK441 pKa = 10.52KK442 pKa = 11.0LMLGRR447 pKa = 11.84NGLTGPIPDD456 pKa = 4.18SLGALAQLEE465 pKa = 4.37YY466 pKa = 11.26VQLNYY471 pKa = 10.8NQLNGQFPSFMAPRR485 pKa = 11.84ALGYY489 pKa = 10.77CYY491 pKa = 7.47MTPNQFQLCPDD502 pKa = 3.64DD503 pKa = 4.88TIVHH507 pKa = 6.15NPEE510 pKa = 3.77SMAFQCATDD519 pKa = 4.03CFIGTTRR526 pKa = 11.84PGAGSSTRR534 pKa = 11.84ANLFVTIALVLLALFFYY551 pKa = 10.94CC552 pKa = 5.99

Molecular weight: 56.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A068RSL7|A0A068RSL7_9FUNG Uncharacterized protein OS=Lichtheimia corymbifera JMRC:FSU:9682 OX=1263082 GN=LCOR_04152.1 PE=4 SV=1
MM1 pKa = 7.26HH2 pKa = 7.14MKK4 pKa = 10.46GKK6 pKa = 8.7RR7 pKa = 11.84TRR9 pKa = 11.84TRR11 pKa = 11.84TRR13 pKa = 11.84TRR15 pKa = 11.84TRR17 pKa = 11.84THH19 pKa = 5.65ICAHH23 pKa = 5.6IRR25 pKa = 11.84AHH27 pKa = 5.83IRR29 pKa = 11.84THH31 pKa = 4.77IRR33 pKa = 11.84TRR35 pKa = 11.84TRR37 pKa = 11.84TRR39 pKa = 11.84TRR41 pKa = 11.84TRR43 pKa = 11.84THH45 pKa = 5.16STHH48 pKa = 5.75IRR50 pKa = 11.84THH52 pKa = 5.33IRR54 pKa = 11.84THH56 pKa = 5.44IRR58 pKa = 11.84THH60 pKa = 4.82IRR62 pKa = 11.84TRR64 pKa = 11.84TRR66 pKa = 11.84TRR68 pKa = 11.84TRR70 pKa = 11.84TRR72 pKa = 11.84THH74 pKa = 5.16STHH77 pKa = 5.75IRR79 pKa = 11.84THH81 pKa = 5.33IRR83 pKa = 11.84THH85 pKa = 5.44IRR87 pKa = 11.84THH89 pKa = 4.82IRR91 pKa = 11.84TRR93 pKa = 11.84TRR95 pKa = 11.84TRR97 pKa = 11.84TRR99 pKa = 11.84TRR101 pKa = 11.84TRR103 pKa = 11.84TRR105 pKa = 11.84SEE107 pKa = 3.71

Molecular weight: 13.39 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12138

1119

13257

5717124

66

6893

431.3

48.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.451 ± 0.019

1.446 ± 0.01

6.051 ± 0.016

5.815 ± 0.023

3.633 ± 0.014

5.404 ± 0.021

3.02 ± 0.014

5.333 ± 0.015

5.15 ± 0.021

8.791 ± 0.025

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.708 ± 0.009

4.241 ± 0.012

5.455 ± 0.025

4.967 ± 0.022

5.666 ± 0.018

8.255 ± 0.027

6.331 ± 0.018

5.878 ± 0.018

1.248 ± 0.007

3.154 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski