Giant panda circovirus 2

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus; unclassified Circovirus

Average proteome isoelectric point is 6.86

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A220IGS9|A0A220IGS9_9CIRC Capsid protein OS=Giant panda circovirus 2 OX=2016457 PE=4 SV=1
MM1 pKa = 8.15DD2 pKa = 4.36ICLHH6 pKa = 6.28CKK8 pKa = 10.19RR9 pKa = 11.84SPLHH13 pKa = 5.85WRR15 pKa = 11.84WTICSMVEE23 pKa = 3.87NQLPQQDD30 pKa = 3.67SDD32 pKa = 3.21ICRR35 pKa = 11.84AILSSLRR42 pKa = 11.84DD43 pKa = 3.56ADD45 pKa = 3.61STLCEE50 pKa = 4.03RR51 pKa = 11.84CFLEE55 pKa = 3.76HH56 pKa = 6.23TLNVRR61 pKa = 11.84KK62 pKa = 9.83ALTNKK67 pKa = 9.04TMTIAQRR74 pKa = 11.84TEE76 pKa = 3.82TLKK79 pKa = 11.14NLVNSPPTKK88 pKa = 9.38EE89 pKa = 3.63ASVPVFGNLTEE100 pKa = 4.85NGASPWTTSPLIWKK114 pKa = 9.2SLNPFPLCTEE124 pKa = 5.38DD125 pKa = 2.98IAVRR129 pKa = 11.84ADD131 pKa = 3.8LSQTFTALAQQSEE144 pKa = 4.91SEE146 pKa = 4.21SSEE149 pKa = 4.02TGSQSSSSASKK160 pKa = 9.78MSPTIEE166 pKa = 4.04QLNSSSTSLEE176 pKa = 3.81EE177 pKa = 4.31SVSLGSADD185 pKa = 3.39TYY187 pKa = 11.26SANN190 pKa = 3.6

Molecular weight: 20.82 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A220IGT9|A0A220IGT9_9CIRC Replication-associated protein OS=Giant panda circovirus 2 OX=2016457 PE=4 SV=1
MM1 pKa = 7.5AALVPYY7 pKa = 10.14VGRR10 pKa = 11.84LAMRR14 pKa = 11.84AGLSNPYY21 pKa = 10.2ARR23 pKa = 11.84RR24 pKa = 11.84AGYY27 pKa = 10.8AFAGRR32 pKa = 11.84VAGMAARR39 pKa = 11.84AGMKK43 pKa = 9.57RR44 pKa = 11.84GYY46 pKa = 9.59RR47 pKa = 11.84AVRR50 pKa = 11.84RR51 pKa = 11.84FARR54 pKa = 11.84RR55 pKa = 11.84PRR57 pKa = 11.84AKK59 pKa = 10.02RR60 pKa = 11.84QRR62 pKa = 11.84LNSRR66 pKa = 11.84SHH68 pKa = 6.88VGEE71 pKa = 4.78AIGTTNCKK79 pKa = 8.94TKK81 pKa = 10.38QCSLTDD87 pKa = 3.26ITAKK91 pKa = 10.35NSRR94 pKa = 11.84TLYY97 pKa = 8.95RR98 pKa = 11.84TGVTDD103 pKa = 4.23IPGGSNPDD111 pKa = 2.91EE112 pKa = 4.04RR113 pKa = 11.84LRR115 pKa = 11.84NHH117 pKa = 5.79VNLRR121 pKa = 11.84GFKK124 pKa = 10.13VCLEE128 pKa = 3.81FRR130 pKa = 11.84NNVTTPLYY138 pKa = 11.12VNVAVLAPKK147 pKa = 8.73NTSGNILSEE156 pKa = 3.97TDD158 pKa = 3.71FFRR161 pKa = 11.84DD162 pKa = 3.37SGTTRR167 pKa = 11.84AKK169 pKa = 10.76DD170 pKa = 3.35FSTALTAMEE179 pKa = 4.42FHH181 pKa = 7.1CLPVNTDD188 pKa = 3.48DD189 pKa = 4.92YY190 pKa = 12.07VVLKK194 pKa = 10.28HH195 pKa = 6.2KK196 pKa = 10.51RR197 pKa = 11.84FRR199 pKa = 11.84LGPLPGATLYY209 pKa = 10.88QNSVGNNYY217 pKa = 10.23KK218 pKa = 10.59NVDD221 pKa = 3.12WYY223 pKa = 10.42IKK225 pKa = 10.13LGRR228 pKa = 11.84QVRR231 pKa = 11.84YY232 pKa = 9.44EE233 pKa = 4.14SSSSQATDD241 pKa = 2.89GHH243 pKa = 6.74VSVAYY248 pKa = 9.15WCDD251 pKa = 2.78AWGAAAGTAAASGSMSVSQRR271 pKa = 11.84YY272 pKa = 4.83ITYY275 pKa = 8.96WKK277 pKa = 10.05EE278 pKa = 3.66PKK280 pKa = 9.02TT281 pKa = 3.79

Molecular weight: 31.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

792

190

321

264.0

29.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.081 ± 1.555

2.904 ± 0.508

5.177 ± 0.845

5.177 ± 1.22

3.409 ± 0.473

6.313 ± 1.201

2.273 ± 0.41

3.157 ± 0.466

5.051 ± 0.45

9.217 ± 1.126

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.399 ± 0.199

4.293 ± 1.092

4.672 ± 0.341

3.03 ± 0.51

7.576 ± 1.29

9.343 ± 1.921

6.439 ± 1.604

6.061 ± 0.748

1.641 ± 0.134

3.788 ± 0.905
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski