Corynebacterium geronticis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2094 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3G6IYW9|A0A3G6IYW9_9CORY Transcriptional regulator LytR OS=Corynebacterium geronticis OX=2079234 GN=lytR PE=3 SV=1
MM1 pKa = 7.92LYY3 pKa = 10.04TIDD6 pKa = 3.96GASLVDD12 pKa = 3.44QGQWEE17 pKa = 4.59YY18 pKa = 10.28TAGPSGTPEE27 pKa = 3.85SLEE30 pKa = 3.92AAEE33 pKa = 6.4AEE35 pKa = 4.23LDD37 pKa = 3.6WEE39 pKa = 4.85NIAQRR44 pKa = 11.84PFNEE48 pKa = 4.08QPDD51 pKa = 4.27LLRR54 pKa = 11.84SNPGDD59 pKa = 3.46LPNIEE64 pKa = 4.9GEE66 pKa = 4.41TGGQDD71 pKa = 2.96AASAKK76 pKa = 10.44SEE78 pKa = 4.08EE79 pKa = 4.37KK80 pKa = 9.95TSNRR84 pKa = 11.84SIEE87 pKa = 4.11DD88 pKa = 3.53VVDD91 pKa = 3.97GRR93 pKa = 11.84SKK95 pKa = 11.63ADD97 pKa = 3.53FPTFSGDD104 pKa = 3.42ASSANPNYY112 pKa = 9.99VPKK115 pKa = 10.27TSPQFARR122 pKa = 11.84AVYY125 pKa = 10.11NAFILEE131 pKa = 4.76WIYY134 pKa = 11.23NANTTPVLEE143 pKa = 4.39VASPVTGQTYY153 pKa = 9.04TMTCVQNTSVTCRR166 pKa = 11.84GGNDD170 pKa = 3.05AVVYY174 pKa = 9.65IYY176 pKa = 10.13PPSPYY181 pKa = 10.2APPDD185 pKa = 3.59GVQWGG190 pKa = 3.56

Molecular weight: 20.46 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3G6IX58|A0A3G6IX58_9CORY Uncharacterized protein OS=Corynebacterium geronticis OX=2079234 GN=CGERO_00020 PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84KK18 pKa = 8.59HH19 pKa = 4.58GFRR22 pKa = 11.84TRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AIVAARR37 pKa = 11.84RR38 pKa = 11.84QKK40 pKa = 10.58GRR42 pKa = 11.84AKK44 pKa = 9.64LTAA47 pKa = 4.21

Molecular weight: 5.49 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2094

0

2094

684442

29

3012

326.9

35.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.605 ± 0.068

0.809 ± 0.017

5.568 ± 0.04

6.586 ± 0.06

3.431 ± 0.035

8.134 ± 0.038

2.342 ± 0.026

5.115 ± 0.036

3.494 ± 0.04

9.876 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.361 ± 0.021

2.88 ± 0.027

4.943 ± 0.037

3.929 ± 0.03

6.141 ± 0.046

5.757 ± 0.033

5.402 ± 0.034

8.115 ± 0.041

1.384 ± 0.021

2.13 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski