Bos taurus papillomavirus 17

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Xipapillomavirus; Xipapillomavirus 4

Average proteome isoelectric point is 6.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1B2K203|A0A1B2K203_9PAPI Replication protein E1 OS=Bos taurus papillomavirus 17 OX=1887215 GN=E1 PE=3 SV=1
MM1 pKa = 7.59RR2 pKa = 11.84GEE4 pKa = 4.67APTIPDD10 pKa = 3.38IEE12 pKa = 5.64LDD14 pKa = 3.78LRR16 pKa = 11.84DD17 pKa = 4.21LVTAVDD23 pKa = 4.31LQCNEE28 pKa = 4.04TLSPDD33 pKa = 3.94FEE35 pKa = 4.78AVPEE39 pKa = 4.35PPSPYY44 pKa = 10.01KK45 pKa = 10.76VVSSCFNCGCKK56 pKa = 10.19LRR58 pKa = 11.84IFVVASSGSIRR69 pKa = 11.84NFHH72 pKa = 6.37QLLLGNLSFLCVTCGKK88 pKa = 10.26VVFSRR93 pKa = 3.8

Molecular weight: 10.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1B2K202|A0A1B2K202_9PAPI Protein E7 OS=Bos taurus papillomavirus 17 OX=1887215 GN=E7 PE=3 SV=1
MM1 pKa = 7.66TSLQDD6 pKa = 3.5RR7 pKa = 11.84FDD9 pKa = 4.07AVQSALMDD17 pKa = 3.42IYY19 pKa = 10.05EE20 pKa = 4.34TAEE23 pKa = 3.85QTIEE27 pKa = 3.98TQIKK31 pKa = 7.9HH32 pKa = 5.23WEE34 pKa = 4.13LIRR37 pKa = 11.84RR38 pKa = 11.84EE39 pKa = 3.95NVLLYY44 pKa = 10.08SARR47 pKa = 11.84QHH49 pKa = 5.6NLSRR53 pKa = 11.84LGFRR57 pKa = 11.84PVPPLKK63 pKa = 10.61VSEE66 pKa = 4.39NKK68 pKa = 10.23AKK70 pKa = 10.19EE71 pKa = 4.03AIGISLYY78 pKa = 10.68LQSLKK83 pKa = 10.73NSPFGTEE90 pKa = 3.41RR91 pKa = 11.84WTLQDD96 pKa = 3.22TSSEE100 pKa = 4.02NFNNSPSGTFKK111 pKa = 10.98KK112 pKa = 10.36NPRR115 pKa = 11.84LATVVYY121 pKa = 10.5DD122 pKa = 4.11NNPMNAMEE130 pKa = 4.16YY131 pKa = 9.44PVWGNIYY138 pKa = 10.37LLSDD142 pKa = 3.64DD143 pKa = 5.43DD144 pKa = 3.91VWHH147 pKa = 7.04KK148 pKa = 10.86YY149 pKa = 9.04VSSVDD154 pKa = 3.57YY155 pKa = 11.34DD156 pKa = 3.78GVFYY160 pKa = 10.66TDD162 pKa = 2.9EE163 pKa = 4.81HH164 pKa = 6.42GNKK167 pKa = 9.4VYY169 pKa = 10.66YY170 pKa = 10.5VQFADD175 pKa = 3.82DD176 pKa = 3.74AQMFSKK182 pKa = 10.65LGQWEE187 pKa = 4.24VTFANTVFSAPVTSSQSSSRR207 pKa = 11.84PPGGPDD213 pKa = 2.8TSQRR217 pKa = 11.84EE218 pKa = 4.26NTQGSSPSSSTAHH231 pKa = 6.3RR232 pKa = 11.84PEE234 pKa = 4.55SQSSWRR240 pKa = 11.84SASRR244 pKa = 11.84GSPEE248 pKa = 3.84TSEE251 pKa = 4.5GRR253 pKa = 11.84QSRR256 pKa = 11.84NRR258 pKa = 11.84HH259 pKa = 3.84RR260 pKa = 11.84HH261 pKa = 4.12SRR263 pKa = 11.84SRR265 pKa = 11.84TRR267 pKa = 11.84SRR269 pKa = 11.84SRR271 pKa = 11.84SRR273 pKa = 11.84EE274 pKa = 3.87SEE276 pKa = 4.1PNSVRR281 pKa = 11.84SRR283 pKa = 11.84SYY285 pKa = 10.08RR286 pKa = 11.84SRR288 pKa = 11.84SRR290 pKa = 11.84SRR292 pKa = 11.84EE293 pKa = 3.88SRR295 pKa = 11.84SSSAGGDD302 pKa = 3.16RR303 pKa = 11.84LSDD306 pKa = 3.29RR307 pKa = 11.84GRR309 pKa = 11.84GRR311 pKa = 11.84QRR313 pKa = 11.84PEE315 pKa = 3.56PGGRR319 pKa = 11.84TPPAPWEE326 pKa = 3.81VGQRR330 pKa = 11.84SRR332 pKa = 11.84TPSRR336 pKa = 11.84KK337 pKa = 8.76SQTRR341 pKa = 11.84LEE343 pKa = 4.09QLISEE348 pKa = 4.58ARR350 pKa = 11.84DD351 pKa = 3.29PPIILVRR358 pKa = 11.84GPQNTLKK365 pKa = 10.49CWRR368 pKa = 11.84NRR370 pKa = 11.84SKK372 pKa = 10.87HH373 pKa = 4.72RR374 pKa = 11.84WSGYY378 pKa = 6.6FQSMSTTFNWICSTSHH394 pKa = 4.94QRR396 pKa = 11.84ASGSRR401 pKa = 11.84MLISFNSVQQRR412 pKa = 11.84EE413 pKa = 4.49LFLKK417 pKa = 10.18HH418 pKa = 6.34VKK420 pKa = 9.84FPKK423 pKa = 9.35NTTHH427 pKa = 6.22VFGFIDD433 pKa = 3.85GLL435 pKa = 3.88

Molecular weight: 49.72 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2328

93

609

388.0

43.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.026 ± 0.591

2.32 ± 1.109

5.455 ± 0.462

6.357 ± 0.332

5.198 ± 0.399

6.014 ± 0.712

1.89 ± 0.287

4.768 ± 0.654

5.069 ± 0.913

7.818 ± 0.703

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.761 ± 0.333

5.369 ± 0.3

6.1 ± 0.868

4.553 ± 0.503

6.271 ± 1.123

9.192 ± 1.45

6.186 ± 0.836

6.1 ± 0.692

1.632 ± 0.417

2.921 ± 0.239
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski