Trematomus pennellii polyomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae

Average proteome isoelectric point is 5.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0E3JRJ3|A0A0E3JRJ3_9POLY Large T-antigen OS=Trematomus pennellii polyomavirus 1 OX=2170103 PE=4 SV=1
MM1 pKa = 6.24QQEE4 pKa = 4.18YY5 pKa = 8.21TADD8 pKa = 3.36ANGRR12 pKa = 11.84NRR14 pKa = 11.84NLLEE18 pKa = 4.16TNKK21 pKa = 9.54EE22 pKa = 3.71VAMANSTTFTSNVYY36 pKa = 10.04ASKK39 pKa = 10.7LIKK42 pKa = 10.6ALGSSVFPGATMEE55 pKa = 5.32DD56 pKa = 4.82NMITWNADD64 pKa = 2.42MDD66 pKa = 4.26ALSFQDD72 pKa = 3.41SQGNKK77 pKa = 7.89EE78 pKa = 3.98DD79 pKa = 4.99RR80 pKa = 11.84ILLRR84 pKa = 11.84EE85 pKa = 4.13KK86 pKa = 11.25VNDD89 pKa = 3.19LWKK92 pKa = 10.52GYY94 pKa = 8.89QAAEE98 pKa = 3.77AVLADD103 pKa = 4.86FAPSDD108 pKa = 4.03TPKK111 pKa = 10.15MAGPVDD117 pKa = 4.35FCADD121 pKa = 3.2VTEE124 pKa = 5.59FLDD127 pKa = 4.2PDD129 pKa = 3.98CTSASAYY136 pKa = 10.94LFMAPASLYY145 pKa = 8.2PQLMRR150 pKa = 11.84IAKK153 pKa = 9.97GYY155 pKa = 10.55RR156 pKa = 11.84LDD158 pKa = 4.43DD159 pKa = 4.08YY160 pKa = 11.45YY161 pKa = 11.77GVAHH165 pKa = 6.81TDD167 pKa = 3.65EE168 pKa = 4.56KK169 pKa = 10.55WGEE172 pKa = 3.59IQYY175 pKa = 10.81FGFKK179 pKa = 8.83TRR181 pKa = 11.84YY182 pKa = 8.84RR183 pKa = 11.84LARR186 pKa = 11.84HH187 pKa = 4.73NMLRR191 pKa = 11.84KK192 pKa = 9.33MEE194 pKa = 4.46ASVSNKK200 pKa = 9.08GWVKK204 pKa = 10.23GCPVVSKK211 pKa = 10.35KK212 pKa = 10.66FNMCKK217 pKa = 9.92SHH219 pKa = 7.14LFNCAGAEE227 pKa = 4.16VTEE230 pKa = 4.55GAVEE234 pKa = 4.23FDD236 pKa = 3.67VLCFNQQTLARR247 pKa = 11.84YY248 pKa = 9.37AKK250 pKa = 9.59DD251 pKa = 3.02TGTCDD256 pKa = 3.5PLLLMGDD263 pKa = 3.7YY264 pKa = 9.81MAFSGLVHH272 pKa = 7.37ACTQCHH278 pKa = 4.6TEE280 pKa = 3.72RR281 pKa = 11.84RR282 pKa = 11.84RR283 pKa = 11.84GGQCHH288 pKa = 4.91ATYY291 pKa = 10.34HH292 pKa = 6.72KK293 pKa = 10.17EE294 pKa = 3.85HH295 pKa = 6.44QGNAKK300 pKa = 10.36AFMMVSNKK308 pKa = 9.52KK309 pKa = 9.78SAATNACDD317 pKa = 3.56EE318 pKa = 4.47SCAVLRR324 pKa = 11.84RR325 pKa = 11.84ASKK328 pKa = 10.37LPRR331 pKa = 11.84YY332 pKa = 9.77DD333 pKa = 3.54RR334 pKa = 11.84LKK336 pKa = 11.29DD337 pKa = 3.57NMDD340 pKa = 3.0IAMKK344 pKa = 10.44VLEE347 pKa = 4.9EE348 pKa = 4.06SDD350 pKa = 3.24ITNSQVAAAMLLSEE364 pKa = 5.78LIPGSVCDD372 pKa = 5.66FFDD375 pKa = 3.6QVISALLKK383 pKa = 10.77AEE385 pKa = 4.19PKK387 pKa = 9.66KK388 pKa = 10.63QGFIFRR394 pKa = 11.84GPYY397 pKa = 8.32NTGKK401 pKa = 8.58STVAAAVMSLLGGSSLNVNSPRR423 pKa = 11.84EE424 pKa = 3.98RR425 pKa = 11.84LWVEE429 pKa = 4.21FGLAMDD435 pKa = 4.52RR436 pKa = 11.84FAVCFEE442 pKa = 4.39DD443 pKa = 3.75VQGIPSPGEE452 pKa = 3.45PCLPFGEE459 pKa = 4.93GWSNLDD465 pKa = 3.36HH466 pKa = 6.53FRR468 pKa = 11.84EE469 pKa = 4.17YY470 pKa = 11.27LDD472 pKa = 4.13GLFKK476 pKa = 11.1VGLEE480 pKa = 4.05KK481 pKa = 10.57KK482 pKa = 9.21HH483 pKa = 5.37QNKK486 pKa = 6.99VTQNFPPWIATTNNYY501 pKa = 9.77IIPEE505 pKa = 4.33SVLEE509 pKa = 4.07RR510 pKa = 11.84AVVIPFKK517 pKa = 10.9RR518 pKa = 11.84MSFDD522 pKa = 3.14VQKK525 pKa = 10.91YY526 pKa = 9.4IEE528 pKa = 4.71EE529 pKa = 4.16FDD531 pKa = 3.25VDD533 pKa = 4.75LRR535 pKa = 11.84FLSSGPCLFLLWLLEE550 pKa = 4.36DD551 pKa = 4.13SVDD554 pKa = 5.48DD555 pKa = 5.45IDD557 pKa = 6.66DD558 pKa = 4.0EE559 pKa = 4.63LLDD562 pKa = 3.86RR563 pKa = 11.84AVVLSLAAKK572 pKa = 7.55MIWNAEE578 pKa = 3.63MRR580 pKa = 11.84DD581 pKa = 4.24FIKK584 pKa = 10.73APPPDD589 pKa = 3.97VLTAVYY595 pKa = 9.89VAEE598 pKa = 5.22DD599 pKa = 3.36GGIRR603 pKa = 11.84CTTGPEE609 pKa = 4.08KK610 pKa = 10.82EE611 pKa = 4.14NTPFTVSKK619 pKa = 9.63VWRR622 pKa = 11.84AIEE625 pKa = 4.08KK626 pKa = 10.6EE627 pKa = 4.1EE628 pKa = 4.03EE629 pKa = 3.92QLPEE633 pKa = 5.1DD634 pKa = 3.67IHH636 pKa = 5.79WTDD639 pKa = 3.65SEE641 pKa = 4.39SDD643 pKa = 3.72SVKK646 pKa = 10.83SVLATPLPFTPPDD659 pKa = 4.41PGLGSSDD666 pKa = 3.8EE667 pKa = 4.29EE668 pKa = 4.47EE669 pKa = 4.29EE670 pKa = 4.35VPPRR674 pKa = 11.84QIPKK678 pKa = 9.77KK679 pKa = 9.29RR680 pKa = 11.84KK681 pKa = 9.48CPFIDD686 pKa = 3.89EE687 pKa = 4.74AATEE691 pKa = 4.22CADD694 pKa = 4.95DD695 pKa = 4.08EE696 pKa = 4.63QSDD699 pKa = 3.82SSEE702 pKa = 4.25PYY704 pKa = 9.54PVPFEE709 pKa = 4.27KK710 pKa = 10.62KK711 pKa = 8.87KK712 pKa = 10.8GPRR715 pKa = 11.84VWVVVRR721 pKa = 11.84EE722 pKa = 4.19DD723 pKa = 3.51GAIGDD728 pKa = 4.5IEE730 pKa = 4.8NGPAPPPDD738 pKa = 3.69EE739 pKa = 4.18QSTSGFTDD747 pKa = 3.49ASGTTDD753 pKa = 3.87KK754 pKa = 11.22DD755 pKa = 3.88DD756 pKa = 5.08PDD758 pKa = 4.06VEE760 pKa = 4.61TSS762 pKa = 3.02

Molecular weight: 84.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0E3JE56|A0A0E3JE56_9POLY VP1 OS=Trematomus pennellii polyomavirus 1 OX=2170103 PE=3 SV=1
MM1 pKa = 7.58GIVIGILAGVSAGIEE16 pKa = 4.29VAVVTAAAAAAEE28 pKa = 4.72AIGAALATAADD39 pKa = 3.46IGLAAEE45 pKa = 4.31VGIAAAEE52 pKa = 4.06TAGEE56 pKa = 4.25LFGEE60 pKa = 4.43TAMAGDD66 pKa = 3.52IVGFGGLIEE75 pKa = 4.87GATEE79 pKa = 4.79PIAAAGMGVGGALQLAGIGATVASAVGTTVAALARR114 pKa = 11.84TRR116 pKa = 11.84AEE118 pKa = 3.69GDD120 pKa = 3.59VAHH123 pKa = 6.31VLVNAGTEE131 pKa = 3.73IQTAVTNIDD140 pKa = 3.27ASSTNARR147 pKa = 11.84VPIWLTAIMGTDD159 pKa = 3.17EE160 pKa = 4.21VLTNLGEE167 pKa = 4.71LEE169 pKa = 4.18NQFSNGRR176 pKa = 11.84LSYY179 pKa = 11.28DD180 pKa = 3.26FTLDD184 pKa = 2.99QATAIAAEE192 pKa = 4.31AEE194 pKa = 4.09QAGRR198 pKa = 11.84GGVHH202 pKa = 5.26YY203 pKa = 10.64HH204 pKa = 6.1PVEE207 pKa = 4.65LDD209 pKa = 3.11TALFEE214 pKa = 5.16KK215 pKa = 9.77MIKK218 pKa = 10.26HH219 pKa = 5.08STQTTFYY226 pKa = 10.39LPAKK230 pKa = 10.44NGMLLSKK237 pKa = 10.45RR238 pKa = 11.84DD239 pKa = 3.7TEE241 pKa = 4.3KK242 pKa = 11.16VINDD246 pKa = 2.52VHH248 pKa = 6.68ARR250 pKa = 11.84NTGGVDD256 pKa = 3.29AQVLGGKK263 pKa = 9.41NPFEE267 pKa = 4.71SWRR270 pKa = 11.84SMASAEE276 pKa = 3.88QDD278 pKa = 2.73KK279 pKa = 9.77WLKK282 pKa = 10.78DD283 pKa = 3.27IEE285 pKa = 4.29KK286 pKa = 10.54EE287 pKa = 3.75EE288 pKa = 4.29GKK290 pKa = 10.62AKK292 pKa = 9.88EE293 pKa = 3.85RR294 pKa = 11.84EE295 pKa = 3.91RR296 pKa = 11.84RR297 pKa = 11.84LEE299 pKa = 3.75NQLRR303 pKa = 11.84HH304 pKa = 5.2LTEE307 pKa = 3.5EE308 pKa = 3.9HH309 pKa = 6.02RR310 pKa = 11.84RR311 pKa = 11.84KK312 pKa = 10.25SRR314 pKa = 11.84AHH316 pKa = 6.42RR317 pKa = 11.84LLDD320 pKa = 3.51EE321 pKa = 4.89RR322 pKa = 11.84EE323 pKa = 4.12WEE325 pKa = 4.07NDD327 pKa = 2.79DD328 pKa = 4.75RR329 pKa = 11.84LAKK332 pKa = 10.51KK333 pKa = 10.44LEE335 pKa = 4.08KK336 pKa = 10.43DD337 pKa = 3.47LQKK340 pKa = 11.32VKK342 pKa = 10.88DD343 pKa = 4.2DD344 pKa = 3.59NDD346 pKa = 3.17KK347 pKa = 11.25RR348 pKa = 11.84EE349 pKa = 3.94QFLEE353 pKa = 4.15DD354 pKa = 2.96AVHH357 pKa = 6.3YY358 pKa = 10.39RR359 pKa = 11.84RR360 pKa = 11.84EE361 pKa = 4.12DD362 pKa = 3.48LFHH365 pKa = 6.46SRR367 pKa = 11.84SMAVFRR373 pKa = 11.84GAEE376 pKa = 4.11YY377 pKa = 10.14PEE379 pKa = 3.81EE380 pKa = 4.65WIGKK384 pKa = 4.72MTRR387 pKa = 11.84IRR389 pKa = 11.84DD390 pKa = 3.56EE391 pKa = 3.89WRR393 pKa = 11.84HH394 pKa = 4.59GVQAFEE400 pKa = 4.17VVLRR404 pKa = 11.84KK405 pKa = 9.83HH406 pKa = 6.44SEE408 pKa = 3.65HH409 pKa = 6.65PQRR412 pKa = 11.84GDD414 pKa = 3.1IPVSNAYY421 pKa = 9.91HH422 pKa = 6.88PALIRR427 pKa = 11.84YY428 pKa = 7.48RR429 pKa = 11.84RR430 pKa = 11.84RR431 pKa = 11.84HH432 pKa = 4.56WRR434 pKa = 11.84LKK436 pKa = 9.09KK437 pKa = 10.59AKK439 pKa = 9.27LVAVNTSDD447 pKa = 3.58GRR449 pKa = 11.84AHH451 pKa = 6.9EE452 pKa = 4.73VTLSWYY458 pKa = 8.93TPVGEE463 pKa = 4.49KK464 pKa = 9.96PVPAGLDD471 pKa = 3.06KK472 pKa = 11.18GFKK475 pKa = 9.56FVRR478 pKa = 11.84EE479 pKa = 4.11LTEE482 pKa = 3.94SQLSVLTDD490 pKa = 3.04YY491 pKa = 11.22LRR493 pKa = 11.84YY494 pKa = 8.91HH495 pKa = 5.46QAGFEE500 pKa = 4.09ISGGALNIPQRR511 pKa = 11.84LLVGALTLQTARR523 pKa = 11.84HH524 pKa = 5.25QSFKK528 pKa = 11.1APRR531 pKa = 11.84KK532 pKa = 9.54RR533 pKa = 11.84KK534 pKa = 9.61AIHH537 pKa = 6.35QDD539 pKa = 2.91APDD542 pKa = 3.27QGRR545 pKa = 11.84IRR547 pKa = 11.84SSKK550 pKa = 8.45RR551 pKa = 11.84RR552 pKa = 11.84KK553 pKa = 9.62RR554 pKa = 11.84RR555 pKa = 11.84TT556 pKa = 3.14

Molecular weight: 61.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1697

55

762

424.3

46.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.546 ± 1.562

1.591 ± 0.737

6.305 ± 0.789

6.953 ± 0.984

3.889 ± 0.534

7.484 ± 0.788

2.121 ± 0.548

3.712 ± 0.453

5.598 ± 0.354

8.014 ± 0.174

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.005 ± 0.745

3.771 ± 0.442

5.48 ± 1.169

4.007 ± 0.836

5.303 ± 1.263

6.6 ± 1.143

5.48 ± 0.265

6.895 ± 0.107

1.65 ± 0.154

2.593 ± 0.452
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski