Tamlana carrageenivorans

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tamlana

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3310 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2I7SDN7|A0A2I7SDN7_9FLAO Transcriptional regulator OS=Tamlana carrageenivorans OX=2069432 GN=C1A40_00250 PE=4 SV=1
MM1 pKa = 7.74KK2 pKa = 10.48LMKK5 pKa = 10.57LSLFVLGLATCFLSCKK21 pKa = 10.13KK22 pKa = 10.65DD23 pKa = 3.64DD24 pKa = 5.25DD25 pKa = 5.42DD26 pKa = 6.83DD27 pKa = 4.03GTTIEE32 pKa = 4.0VRR34 pKa = 11.84DD35 pKa = 3.59RR36 pKa = 11.84AEE38 pKa = 3.59QQIEE42 pKa = 4.32DD43 pKa = 3.81KK44 pKa = 11.28ALLLDD49 pKa = 3.87YY50 pKa = 11.41LEE52 pKa = 4.12THH54 pKa = 6.86YY55 pKa = 11.61YY56 pKa = 8.72NASDD60 pKa = 4.08FDD62 pKa = 4.32GSNPDD67 pKa = 3.8PKK69 pKa = 11.01SIDD72 pKa = 3.35IEE74 pKa = 4.02ITEE77 pKa = 4.25LKK79 pKa = 10.57EE80 pKa = 3.99NEE82 pKa = 4.4TVPTGHH88 pKa = 7.54RR89 pKa = 11.84LLIQDD94 pKa = 4.79TIMKK98 pKa = 9.65YY99 pKa = 7.11VTYY102 pKa = 10.8YY103 pKa = 10.18DD104 pKa = 3.57VKK106 pKa = 10.99YY107 pKa = 10.21EE108 pKa = 4.39IYY110 pKa = 11.0YY111 pKa = 10.7LDD113 pKa = 3.92LNKK116 pKa = 10.49NVDD119 pKa = 3.24KK120 pKa = 10.08TAPSPHH126 pKa = 6.17FCDD129 pKa = 4.46NVVTNYY135 pKa = 10.76KK136 pKa = 10.72GFTLDD141 pKa = 3.67NEE143 pKa = 4.37VFDD146 pKa = 4.98RR147 pKa = 11.84SEE149 pKa = 3.83TGAFNSDD156 pKa = 3.5LLNNIDD162 pKa = 3.06AWQIVIPEE170 pKa = 4.94FYY172 pKa = 9.55TAEE175 pKa = 3.61AFMEE179 pKa = 4.58NNDD182 pKa = 3.4GTSNYY187 pKa = 8.62INHH190 pKa = 6.63GVGVMFAPSGLGYY203 pKa = 10.28FSSVRR208 pKa = 11.84PGIPSYY214 pKa = 11.38SCLVFNFDD222 pKa = 3.51VLQMFEE228 pKa = 4.52NDD230 pKa = 3.19HH231 pKa = 7.23DD232 pKa = 5.03GDD234 pKa = 4.21GVPSYY239 pKa = 11.23KK240 pKa = 10.25EE241 pKa = 3.98DD242 pKa = 3.76LNGDD246 pKa = 3.61GKK248 pKa = 9.85FTYY251 pKa = 10.5NSAEE255 pKa = 4.08GVFDD259 pKa = 5.95GDD261 pKa = 3.73DD262 pKa = 3.43TDD264 pKa = 5.21ANGILDD270 pKa = 5.12FVDD273 pKa = 3.68TDD275 pKa = 3.97DD276 pKa = 6.28DD277 pKa = 5.09GDD279 pKa = 4.17GVLTIYY285 pKa = 10.96EE286 pKa = 5.12DD287 pKa = 3.44IDD289 pKa = 4.7GDD291 pKa = 4.12GDD293 pKa = 3.69PTNDD297 pKa = 3.06IGKK300 pKa = 9.62NGIPKK305 pKa = 10.24YY306 pKa = 10.35LDD308 pKa = 3.66PEE310 pKa = 4.19EE311 pKa = 4.78TEE313 pKa = 4.02ANYY316 pKa = 10.62DD317 pKa = 3.16II318 pKa = 5.62

Molecular weight: 35.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2I7SE80|A0A2I7SE80_9FLAO 50S ribosomal protein L31 OS=Tamlana carrageenivorans OX=2069432 GN=C1A40_01300 PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSKK10 pKa = 9.13RR11 pKa = 11.84KK12 pKa = 9.48RR13 pKa = 11.84RR14 pKa = 11.84NKK16 pKa = 9.49HH17 pKa = 3.94GFRR20 pKa = 11.84EE21 pKa = 4.27RR22 pKa = 11.84MASANGRR29 pKa = 11.84KK30 pKa = 9.04VLARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.09GRR40 pKa = 11.84KK41 pKa = 7.97KK42 pKa = 10.72LSVSSEE48 pKa = 3.76ARR50 pKa = 11.84HH51 pKa = 5.78KK52 pKa = 10.72KK53 pKa = 9.83

Molecular weight: 6.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3310

0

3310

1129353

38

4718

341.2

38.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.538 ± 0.045

0.804 ± 0.015

5.682 ± 0.035

6.45 ± 0.04

5.092 ± 0.031

6.323 ± 0.044

1.967 ± 0.02

7.74 ± 0.037

7.919 ± 0.053

9.175 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.133 ± 0.018

6.194 ± 0.04

3.361 ± 0.025

3.419 ± 0.023

3.45 ± 0.026

6.458 ± 0.036

5.809 ± 0.048

6.294 ± 0.031

1.087 ± 0.015

4.105 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski