Arthrobacter phage Yang

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Yangvirus; Arthobacter virus Yang

Average proteome isoelectric point is 6.49

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 68 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3G2KJF8|A0A3G2KJF8_9CAUD DNA primase/helicase OS=Arthrobacter phage Yang OX=2419970 GN=38 PE=4 SV=1
MM1 pKa = 7.85DD2 pKa = 6.29LDD4 pKa = 5.22DD5 pKa = 7.18DD6 pKa = 4.93IDD8 pKa = 5.43LEE10 pKa = 4.54LDD12 pKa = 3.06PRR14 pKa = 11.84EE15 pKa = 4.31YY16 pKa = 11.09VCAACRR22 pKa = 11.84LTHH25 pKa = 6.13WRR27 pKa = 11.84GAPDD31 pKa = 3.72PCDD34 pKa = 3.11RR35 pKa = 11.84AA36 pKa = 3.65

Molecular weight: 4.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3G2KJH4|A0A3G2KJH4_9CAUD Endolysin OS=Arthrobacter phage Yang OX=2419970 GN=59 PE=4 SV=1
MM1 pKa = 8.24VEE3 pKa = 4.26EE4 pKa = 4.22VTPAARR10 pKa = 11.84IAQAAQAFDD19 pKa = 3.78SGNGEE24 pKa = 4.05AQALTAQALARR35 pKa = 11.84LAYY38 pKa = 9.81RR39 pKa = 11.84RR40 pKa = 11.84RR41 pKa = 11.84HH42 pKa = 5.55SGKK45 pKa = 7.69TCQTCRR51 pKa = 11.84EE52 pKa = 4.33TKK54 pKa = 9.67PLSAFGFDD62 pKa = 3.64ALRR65 pKa = 11.84PDD67 pKa = 4.04GLSVRR72 pKa = 11.84CRR74 pKa = 11.84ACNSARR80 pKa = 11.84MRR82 pKa = 11.84ASRR85 pKa = 11.84AARR88 pKa = 11.84VNVPQPGQPSLMM100 pKa = 4.21

Molecular weight: 10.75 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

68

0

68

13449

36

967

197.8

21.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.399 ± 0.468

0.595 ± 0.164

6.588 ± 0.391

5.926 ± 0.398

3.041 ± 0.182

8.529 ± 0.462

1.829 ± 0.191

4.164 ± 0.286

3.985 ± 0.294

8.61 ± 0.293

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.74 ± 0.113

2.253 ± 0.178

5.071 ± 0.281

2.997 ± 0.205

7.517 ± 0.559

5.614 ± 0.317

6.566 ± 0.419

7.279 ± 0.379

1.785 ± 0.122

2.513 ± 0.214
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski