Clostridium disporicum

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Clostridiaceae; Clostridium

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3202 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A174DQU7|A0A174DQU7_9CLOT MobA-like protein OS=Clostridium disporicum OX=84024 GN=ERS852471_01255 PE=4 SV=1
MM1 pKa = 7.42KK2 pKa = 10.41VNEE5 pKa = 4.42IVSFLQEE12 pKa = 3.95NEE14 pKa = 4.23LGDD17 pKa = 3.98VEE19 pKa = 4.26ILKK22 pKa = 10.31SEE24 pKa = 4.1KK25 pKa = 10.53DD26 pKa = 3.34LLLVNFYY33 pKa = 11.43YY34 pKa = 10.87DD35 pKa = 3.51FDD37 pKa = 4.65EE38 pKa = 5.72DD39 pKa = 4.02LLAAAKK45 pKa = 10.11AYY47 pKa = 10.33AKK49 pKa = 10.01EE50 pKa = 4.07EE51 pKa = 4.37CEE53 pKa = 4.7DD54 pKa = 3.77EE55 pKa = 5.63SSEE58 pKa = 3.99AWEE61 pKa = 4.02KK62 pKa = 10.94EE63 pKa = 3.87YY64 pKa = 11.09YY65 pKa = 10.32LPYY68 pKa = 10.63LYY70 pKa = 10.35DD71 pKa = 3.5FCNDD75 pKa = 3.06EE76 pKa = 4.14VLSIVEE82 pKa = 5.18DD83 pKa = 3.21ITEE86 pKa = 4.06EE87 pKa = 3.98LNIAGEE93 pKa = 4.25FMAFQMKK100 pKa = 10.31DD101 pKa = 2.7RR102 pKa = 11.84TAEE105 pKa = 3.94YY106 pKa = 9.41VQFMALFTNEE116 pKa = 4.7DD117 pKa = 3.18SDD119 pKa = 3.81ISIEE123 pKa = 4.23EE124 pKa = 4.04VVKK127 pKa = 10.71DD128 pKa = 3.8YY129 pKa = 11.24IGG131 pKa = 3.41

Molecular weight: 15.33 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A174IRU3|A0A174IRU3_9CLOT 50S ribosomal protein L13 OS=Clostridium disporicum OX=84024 GN=rplM PE=3 SV=1
MM1 pKa = 7.29ARR3 pKa = 11.84KK4 pKa = 9.68AIIEE8 pKa = 4.24KK9 pKa = 9.41WSKK12 pKa = 7.47TPKK15 pKa = 8.19YY16 pKa = 5.65TTRR19 pKa = 11.84AYY21 pKa = 8.63TRR23 pKa = 11.84CRR25 pKa = 11.84ICGRR29 pKa = 11.84PHH31 pKa = 6.07AVLRR35 pKa = 11.84KK36 pKa = 9.58FGICRR41 pKa = 11.84ICFRR45 pKa = 11.84EE46 pKa = 3.81LAYY49 pKa = 10.04KK50 pKa = 10.84GEE52 pKa = 4.18IPGCRR57 pKa = 11.84KK58 pKa = 10.18ASWW61 pKa = 3.01

Molecular weight: 7.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3202

0

3202

981246

30

2283

306.4

34.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.659 ± 0.051

1.192 ± 0.019

5.724 ± 0.041

7.612 ± 0.046

4.386 ± 0.035

6.574 ± 0.044

1.274 ± 0.015

10.062 ± 0.058

8.587 ± 0.044

9.009 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.601 ± 0.02

6.384 ± 0.048

2.711 ± 0.021

2.08 ± 0.019

3.396 ± 0.029

6.162 ± 0.031

4.956 ± 0.035

6.677 ± 0.04

0.678 ± 0.012

4.274 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski