Torque teno mini virus 12

Taxonomy: Viruses; Anelloviridae; Betatorquevirus

Average proteome isoelectric point is 7.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A8DMR2|A8DMR2_9VIRU Capsid protein OS=Torque teno mini virus 12 OX=2065038 PE=3 SV=1
MM1 pKa = 7.57SDD3 pKa = 3.6YY4 pKa = 10.96YY5 pKa = 11.19KK6 pKa = 10.95KK7 pKa = 9.97LTIGPRR13 pKa = 11.84HH14 pKa = 6.06AQLNWTNAIVTLHH27 pKa = 7.25DD28 pKa = 4.63LQCQCDD34 pKa = 4.34DD35 pKa = 4.56PLCHH39 pKa = 6.74TIEE42 pKa = 4.38TIINQEE48 pKa = 3.73KK49 pKa = 10.26SLKK52 pKa = 9.43FSKK55 pKa = 10.69GLSEE59 pKa = 4.87KK60 pKa = 10.32IKK62 pKa = 10.18PCLTTGEE69 pKa = 4.25AGGVDD74 pKa = 3.68VVEE77 pKa = 5.24DD78 pKa = 4.18FGDD81 pKa = 4.33DD82 pKa = 3.25EE83 pKa = 5.07LEE85 pKa = 3.96RR86 pKa = 11.84LFAEE90 pKa = 5.37DD91 pKa = 3.6GTGDD95 pKa = 3.59TDD97 pKa = 3.5TGG99 pKa = 3.62

Molecular weight: 10.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A8DMR4|A8DMR4_9VIRU ORF4 OS=Torque teno mini virus 12 OX=2065038 PE=4 SV=1
MM1 pKa = 7.2FVIHH5 pKa = 7.14RR6 pKa = 11.84PNQTFLNPVTSYY18 pKa = 10.49RR19 pKa = 11.84QLYY22 pKa = 10.1CRR24 pKa = 11.84IQNIPSNTTCKK35 pKa = 10.27PLTSEE40 pKa = 4.41GDD42 pKa = 3.7SLQKK46 pKa = 10.62RR47 pKa = 11.84LQNEE51 pKa = 4.37SKK53 pKa = 9.4KK54 pKa = 9.04TMKK57 pKa = 10.38LNKK60 pKa = 9.57LFCHH64 pKa = 6.4LQDD67 pKa = 3.49KK68 pKa = 8.85LQWTSSSKK76 pKa = 10.32PPRR79 pKa = 11.84QHH81 pKa = 6.25RR82 pKa = 11.84QRR84 pKa = 11.84THH86 pKa = 5.69RR87 pKa = 11.84RR88 pKa = 11.84RR89 pKa = 11.84KK90 pKa = 9.68KK91 pKa = 9.92SRR93 pKa = 11.84KK94 pKa = 7.87HH95 pKa = 6.05CSSSSSDD102 pKa = 3.15TSEE105 pKa = 4.58SNGNSDD111 pKa = 4.45TEE113 pKa = 4.38SSSCC117 pKa = 4.47

Molecular weight: 13.61 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

941

64

661

235.3

27.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.507 ± 1.032

1.913 ± 0.85

4.676 ± 1.435

5.101 ± 0.756

4.038 ± 0.585

4.145 ± 1.234

2.125 ± 0.803

4.676 ± 0.891

8.077 ± 0.39

9.245 ± 0.442

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.913 ± 0.409

5.526 ± 0.85

7.651 ± 1.558

5.101 ± 0.694

6.908 ± 1.233

6.482 ± 2.787

8.608 ± 0.616

3.401 ± 0.497

2.019 ± 0.409

4.888 ± 1.296
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski