Actinophytocola xanthii

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Pseudonocardiales; Pseudonocardiaceae; Actinophytocola

Average proteome isoelectric point is 6.23

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7316 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Q8CBU3|A0A1Q8CBU3_9PSEU HTH tetR-type domain-containing protein OS=Actinophytocola xanthii OX=1912961 GN=BU204_30105 PE=4 SV=1
MM1 pKa = 6.74TAHH4 pKa = 7.31AAVLCVVSAGVTQTGTTVVGSPGNDD29 pKa = 3.3TIDD32 pKa = 4.52CGGTDD37 pKa = 3.68PGKK40 pKa = 9.35TITGNGGNDD49 pKa = 4.1TITGSAFNDD58 pKa = 4.36TIDD61 pKa = 4.5GGDD64 pKa = 3.78GNDD67 pKa = 4.09TITGGTGADD76 pKa = 3.72SLTGGLGADD85 pKa = 4.5TISGSAGNDD94 pKa = 3.25VLIGSSNDD102 pKa = 3.34GAQDD106 pKa = 3.61SLDD109 pKa = 3.93GGDD112 pKa = 6.07GIDD115 pKa = 3.71TCQGPAPDD123 pKa = 4.53PDD125 pKa = 3.03IHH127 pKa = 7.01ASCEE131 pKa = 4.18NTSTPPGTGPGSGLGNATALCTATGGVLSLTVNPVGYY168 pKa = 9.72ICVFNPLRR176 pKa = 11.84PADD179 pKa = 3.81RR180 pKa = 11.84RR181 pKa = 11.84VAEE184 pKa = 4.26ARR186 pKa = 11.84RR187 pKa = 11.84ICTGSGGTFVSLLLPVSYY205 pKa = 11.28ACLLPNARR213 pKa = 11.84SASS216 pKa = 3.61

Molecular weight: 20.82 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Q8CVM6|A0A1Q8CVM6_9PSEU Uncharacterized protein OS=Actinophytocola xanthii OX=1912961 GN=BU204_07435 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84ARR15 pKa = 11.84THH17 pKa = 5.69GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILAARR35 pKa = 11.84RR36 pKa = 11.84GKK38 pKa = 9.97GRR40 pKa = 11.84KK41 pKa = 8.97RR42 pKa = 11.84LSAA45 pKa = 3.96

Molecular weight: 5.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7316

0

7316

2454192

32

6449

335.5

35.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.47 ± 0.045

0.765 ± 0.008

6.047 ± 0.024

5.759 ± 0.031

2.757 ± 0.016

9.282 ± 0.031

2.2 ± 0.012

2.936 ± 0.023

1.454 ± 0.018

10.601 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.651 ± 0.012

1.863 ± 0.018

6.063 ± 0.026

2.596 ± 0.015

8.449 ± 0.036

4.981 ± 0.023

6.191 ± 0.033

9.443 ± 0.032

1.544 ± 0.012

1.947 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski