Amino acid dipepetide frequency for Wenzhou channeled applesnail virus 3

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.583AlaAla: 3.583 ± 0.0
0.796AlaCys: 0.796 ± 0.0
3.583AlaAsp: 3.583 ± 0.0
1.194AlaGlu: 1.194 ± 0.0
5.175AlaPhe: 5.175 ± 0.0
5.175AlaGly: 5.175 ± 0.0
0.796AlaHis: 0.796 ± 0.0
5.573AlaIle: 5.573 ± 0.0
5.573AlaLys: 5.573 ± 0.0
4.379AlaLeu: 4.379 ± 0.0
3.583AlaMet: 3.583 ± 0.0
2.389AlaAsn: 2.389 ± 0.0
3.185AlaPro: 3.185 ± 0.0
1.99AlaGln: 1.99 ± 0.0
3.981AlaArg: 3.981 ± 0.0
1.592AlaSer: 1.592 ± 0.0
3.185AlaThr: 3.185 ± 0.0
2.787AlaVal: 2.787 ± 0.0
1.194AlaTrp: 1.194 ± 0.0
2.787AlaTyr: 2.787 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.398CysAla: 0.398 ± 0.0
0.796CysCys: 0.796 ± 0.0
0.796CysAsp: 0.796 ± 0.0
0.398CysGlu: 0.398 ± 0.0
0.398CysPhe: 0.398 ± 0.0
1.99CysGly: 1.99 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.796CysIle: 0.796 ± 0.0
0.398CysLys: 0.398 ± 0.0
2.787CysLeu: 2.787 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.398CysPro: 0.398 ± 0.0
1.592CysGln: 1.592 ± 0.0
0.398CysArg: 0.398 ± 0.0
1.592CysSer: 1.592 ± 0.0
0.796CysThr: 0.796 ± 0.0
1.194CysVal: 1.194 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.796CysTyr: 0.796 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.787AspAla: 2.787 ± 0.0
1.592AspCys: 1.592 ± 0.0
5.971AspAsp: 5.971 ± 0.0
5.573AspGlu: 5.573 ± 0.0
2.389AspPhe: 2.389 ± 0.0
2.389AspGly: 2.389 ± 0.0
1.99AspHis: 1.99 ± 0.0
8.36AspIle: 8.36 ± 0.0
4.379AspLys: 4.379 ± 0.0
5.175AspLeu: 5.175 ± 0.0
1.194AspMet: 1.194 ± 0.0
1.99AspAsn: 1.99 ± 0.0
1.194AspPro: 1.194 ± 0.0
0.796AspGln: 0.796 ± 0.0
2.787AspArg: 2.787 ± 0.0
3.185AspSer: 3.185 ± 0.0
2.389AspThr: 2.389 ± 0.0
3.981AspVal: 3.981 ± 0.0
1.592AspTrp: 1.592 ± 0.0
3.583AspTyr: 3.583 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
1.99GluAla: 1.99 ± 0.0
0.796GluCys: 0.796 ± 0.0
2.787GluAsp: 2.787 ± 0.0
1.194GluGlu: 1.194 ± 0.0
1.99GluPhe: 1.99 ± 0.0
1.592GluGly: 1.592 ± 0.0
0.398GluHis: 0.398 ± 0.0
3.981GluIle: 3.981 ± 0.0
1.592GluLys: 1.592 ± 0.0
3.981GluLeu: 3.981 ± 0.0
0.796GluMet: 0.796 ± 0.0
2.389GluAsn: 2.389 ± 0.0
1.194GluPro: 1.194 ± 0.0
2.389GluGln: 2.389 ± 0.0
2.389GluArg: 2.389 ± 0.0
2.389GluSer: 2.389 ± 0.0
1.592GluThr: 1.592 ± 0.0
3.185GluVal: 3.185 ± 0.0
0.796GluTrp: 0.796 ± 0.0
3.981GluTyr: 3.981 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
3.185PheAla: 3.185 ± 0.0
0.398PheCys: 0.398 ± 0.0
2.389PheAsp: 2.389 ± 0.0
2.389PheGlu: 2.389 ± 0.0
3.185PhePhe: 3.185 ± 0.0
2.389PheGly: 2.389 ± 0.0
0.796PheHis: 0.796 ± 0.0
4.379PheIle: 4.379 ± 0.0
3.981PheLys: 3.981 ± 0.0
2.389PheLeu: 2.389 ± 0.0
1.592PheMet: 1.592 ± 0.0
2.389PheAsn: 2.389 ± 0.0
2.389PhePro: 2.389 ± 0.0
3.981PheGln: 3.981 ± 0.0
2.389PheArg: 2.389 ± 0.0
1.99PheSer: 1.99 ± 0.0
4.379PheThr: 4.379 ± 0.0
4.379PheVal: 4.379 ± 0.0
0.398PheTrp: 0.398 ± 0.0
3.185PheTyr: 3.185 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
1.99GlyAla: 1.99 ± 0.0
0.0GlyCys: 0.0 ± 0.0
6.768GlyAsp: 6.768 ± 0.0
3.185GlyGlu: 3.185 ± 0.0
0.796GlyPhe: 0.796 ± 0.0
3.185GlyGly: 3.185 ± 0.0
0.796GlyHis: 0.796 ± 0.0
3.981GlyIle: 3.981 ± 0.0
4.379GlyLys: 4.379 ± 0.0
4.777GlyLeu: 4.777 ± 0.0
0.796GlyMet: 0.796 ± 0.0
3.981GlyAsn: 3.981 ± 0.0
1.592GlyPro: 1.592 ± 0.0
1.194GlyGln: 1.194 ± 0.0
1.194GlyArg: 1.194 ± 0.0
4.777GlySer: 4.777 ± 0.0
1.592GlyThr: 1.592 ± 0.0
3.185GlyVal: 3.185 ± 0.0
0.398GlyTrp: 0.398 ± 0.0
3.981GlyTyr: 3.981 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
1.194HisAla: 1.194 ± 0.0
0.398HisCys: 0.398 ± 0.0
1.194HisAsp: 1.194 ± 0.0
1.592HisGlu: 1.592 ± 0.0
1.592HisPhe: 1.592 ± 0.0
0.0HisGly: 0.0 ± 0.0
0.0HisHis: 0.0 ± 0.0
1.194HisIle: 1.194 ± 0.0
1.194HisLys: 1.194 ± 0.0
0.796HisLeu: 0.796 ± 0.0
1.194HisMet: 1.194 ± 0.0
0.796HisAsn: 0.796 ± 0.0
0.0HisPro: 0.0 ± 0.0
1.194HisGln: 1.194 ± 0.0
0.0HisArg: 0.0 ± 0.0
0.796HisSer: 0.796 ± 0.0
1.194HisThr: 1.194 ± 0.0
2.389HisVal: 2.389 ± 0.0
0.398HisTrp: 0.398 ± 0.0
1.592HisTyr: 1.592 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
4.777IleAla: 4.777 ± 0.0
0.796IleCys: 0.796 ± 0.0
3.185IleAsp: 3.185 ± 0.0
3.185IleGlu: 3.185 ± 0.0
2.787IlePhe: 2.787 ± 0.0
4.777IleGly: 4.777 ± 0.0
0.796IleHis: 0.796 ± 0.0
2.389IleIle: 2.389 ± 0.0
5.573IleLys: 5.573 ± 0.0
3.981IleLeu: 3.981 ± 0.0
2.787IleMet: 2.787 ± 0.0
3.583IleAsn: 3.583 ± 0.0
7.564IlePro: 7.564 ± 0.0
2.389IleGln: 2.389 ± 0.0
2.787IleArg: 2.787 ± 0.0
5.971IleSer: 5.971 ± 0.0
3.981IleThr: 3.981 ± 0.0
3.981IleVal: 3.981 ± 0.0
0.796IleTrp: 0.796 ± 0.0
1.592IleTyr: 1.592 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
1.99LysAla: 1.99 ± 0.0
1.194LysCys: 1.194 ± 0.0
3.583LysAsp: 3.583 ± 0.0
2.787LysGlu: 2.787 ± 0.0
4.379LysPhe: 4.379 ± 0.0
2.787LysGly: 2.787 ± 0.0
1.99LysHis: 1.99 ± 0.0
5.971LysIle: 5.971 ± 0.0
1.592LysLys: 1.592 ± 0.0
5.175LysLeu: 5.175 ± 0.0
3.583LysMet: 3.583 ± 0.0
1.99LysAsn: 1.99 ± 0.0
1.194LysPro: 1.194 ± 0.0
1.194LysGln: 1.194 ± 0.0
3.185LysArg: 3.185 ± 0.0
2.787LysSer: 2.787 ± 0.0
6.369LysThr: 6.369 ± 0.0
5.175LysVal: 5.175 ± 0.0
0.0LysTrp: 0.0 ± 0.0
2.787LysTyr: 2.787 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
5.573LeuAla: 5.573 ± 0.0
1.194LeuCys: 1.194 ± 0.0
2.787LeuAsp: 2.787 ± 0.0
1.99LeuGlu: 1.99 ± 0.0
5.573LeuPhe: 5.573 ± 0.0
3.185LeuGly: 3.185 ± 0.0
1.194LeuHis: 1.194 ± 0.0
3.185LeuIle: 3.185 ± 0.0
5.175LeuLys: 5.175 ± 0.0
7.166LeuLeu: 7.166 ± 0.0
3.185LeuMet: 3.185 ± 0.0
5.573LeuAsn: 5.573 ± 0.0
4.379LeuPro: 4.379 ± 0.0
5.971LeuGln: 5.971 ± 0.0
2.787LeuArg: 2.787 ± 0.0
7.962LeuSer: 7.962 ± 0.0
4.777LeuThr: 4.777 ± 0.0
7.962LeuVal: 7.962 ± 0.0
1.194LeuTrp: 1.194 ± 0.0
2.389LeuTyr: 2.389 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
2.787MetAla: 2.787 ± 0.0
0.796MetCys: 0.796 ± 0.0
2.389MetAsp: 2.389 ± 0.0
0.796MetGlu: 0.796 ± 0.0
3.583MetPhe: 3.583 ± 0.0
1.194MetGly: 1.194 ± 0.0
2.389MetHis: 2.389 ± 0.0
0.796MetIle: 0.796 ± 0.0
1.194MetLys: 1.194 ± 0.0
2.389MetLeu: 2.389 ± 0.0
1.592MetMet: 1.592 ± 0.0
0.796MetAsn: 0.796 ± 0.0
0.398MetPro: 0.398 ± 0.0
2.389MetGln: 2.389 ± 0.0
2.389MetArg: 2.389 ± 0.0
4.379MetSer: 4.379 ± 0.0
1.99MetThr: 1.99 ± 0.0
2.389MetVal: 2.389 ± 0.0
0.796MetTrp: 0.796 ± 0.0
0.796MetTyr: 0.796 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
4.379AsnAla: 4.379 ± 0.0
1.592AsnCys: 1.592 ± 0.0
3.185AsnAsp: 3.185 ± 0.0
2.389AsnGlu: 2.389 ± 0.0
0.796AsnPhe: 0.796 ± 0.0
3.981AsnGly: 3.981 ± 0.0
1.592AsnHis: 1.592 ± 0.0
4.777AsnIle: 4.777 ± 0.0
2.389AsnLys: 2.389 ± 0.0
5.573AsnLeu: 5.573 ± 0.0
2.389AsnMet: 2.389 ± 0.0
3.583AsnAsn: 3.583 ± 0.0
1.99AsnPro: 1.99 ± 0.0
2.787AsnGln: 2.787 ± 0.0
1.99AsnArg: 1.99 ± 0.0
3.583AsnSer: 3.583 ± 0.0
1.99AsnThr: 1.99 ± 0.0
4.777AsnVal: 4.777 ± 0.0
0.398AsnTrp: 0.398 ± 0.0
1.99AsnTyr: 1.99 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
3.981ProAla: 3.981 ± 0.0
0.0ProCys: 0.0 ± 0.0
1.592ProAsp: 1.592 ± 0.0
0.796ProGlu: 0.796 ± 0.0
2.787ProPhe: 2.787 ± 0.0
0.796ProGly: 0.796 ± 0.0
0.796ProHis: 0.796 ± 0.0
4.379ProIle: 4.379 ± 0.0
2.787ProLys: 2.787 ± 0.0
3.583ProLeu: 3.583 ± 0.0
1.592ProMet: 1.592 ± 0.0
1.194ProAsn: 1.194 ± 0.0
1.592ProPro: 1.592 ± 0.0
1.194ProGln: 1.194 ± 0.0
1.99ProArg: 1.99 ± 0.0
3.185ProSer: 3.185 ± 0.0
1.99ProThr: 1.99 ± 0.0
2.389ProVal: 2.389 ± 0.0
0.796ProTrp: 0.796 ± 0.0
4.777ProTyr: 4.777 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
3.583GlnAla: 3.583 ± 0.0
0.398GlnCys: 0.398 ± 0.0
1.99GlnAsp: 1.99 ± 0.0
2.389GlnGlu: 2.389 ± 0.0
1.592GlnPhe: 1.592 ± 0.0
3.185GlnGly: 3.185 ± 0.0
0.0GlnHis: 0.0 ± 0.0
1.592GlnIle: 1.592 ± 0.0
1.194GlnLys: 1.194 ± 0.0
5.971GlnLeu: 5.971 ± 0.0
0.398GlnMet: 0.398 ± 0.0
3.583GlnAsn: 3.583 ± 0.0
2.787GlnPro: 2.787 ± 0.0
1.99GlnGln: 1.99 ± 0.0
0.398GlnArg: 0.398 ± 0.0
3.583GlnSer: 3.583 ± 0.0
3.981GlnThr: 3.981 ± 0.0
3.981GlnVal: 3.981 ± 0.0
0.796GlnTrp: 0.796 ± 0.0
1.194GlnTyr: 1.194 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
1.592ArgAla: 1.592 ± 0.0
0.796ArgCys: 0.796 ± 0.0
1.99ArgAsp: 1.99 ± 0.0
1.194ArgGlu: 1.194 ± 0.0
3.185ArgPhe: 3.185 ± 0.0
2.389ArgGly: 2.389 ± 0.0
0.796ArgHis: 0.796 ± 0.0
2.389ArgIle: 2.389 ± 0.0
2.389ArgLys: 2.389 ± 0.0
3.185ArgLeu: 3.185 ± 0.0
1.592ArgMet: 1.592 ± 0.0
2.787ArgAsn: 2.787 ± 0.0
1.592ArgPro: 1.592 ± 0.0
0.796ArgGln: 0.796 ± 0.0
2.389ArgArg: 2.389 ± 0.0
1.99ArgSer: 1.99 ± 0.0
2.389ArgThr: 2.389 ± 0.0
3.981ArgVal: 3.981 ± 0.0
0.796ArgTrp: 0.796 ± 0.0
1.99ArgTyr: 1.99 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
3.981SerAla: 3.981 ± 0.0
1.194SerCys: 1.194 ± 0.0
2.787SerAsp: 2.787 ± 0.0
3.583SerGlu: 3.583 ± 0.0
3.185SerPhe: 3.185 ± 0.0
3.981SerGly: 3.981 ± 0.0
1.99SerHis: 1.99 ± 0.0
3.583SerIle: 3.583 ± 0.0
3.981SerLys: 3.981 ± 0.0
5.175SerLeu: 5.175 ± 0.0
3.583SerMet: 3.583 ± 0.0
5.573SerAsn: 5.573 ± 0.0
1.99SerPro: 1.99 ± 0.0
5.971SerGln: 5.971 ± 0.0
1.592SerArg: 1.592 ± 0.0
3.185SerSer: 3.185 ± 0.0
6.369SerThr: 6.369 ± 0.0
3.981SerVal: 3.981 ± 0.0
0.398SerTrp: 0.398 ± 0.0
1.99SerTyr: 1.99 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
4.777ThrAla: 4.777 ± 0.0
0.796ThrCys: 0.796 ± 0.0
5.175ThrAsp: 5.175 ± 0.0
1.194ThrGlu: 1.194 ± 0.0
4.379ThrPhe: 4.379 ± 0.0
3.583ThrGly: 3.583 ± 0.0
0.796ThrHis: 0.796 ± 0.0
5.573ThrIle: 5.573 ± 0.0
2.787ThrLys: 2.787 ± 0.0
4.777ThrLeu: 4.777 ± 0.0
2.389ThrMet: 2.389 ± 0.0
3.185ThrAsn: 3.185 ± 0.0
3.185ThrPro: 3.185 ± 0.0
2.787ThrGln: 2.787 ± 0.0
2.389ThrArg: 2.389 ± 0.0
3.583ThrSer: 3.583 ± 0.0
4.379ThrThr: 4.379 ± 0.0
3.583ThrVal: 3.583 ± 0.0
0.796ThrTrp: 0.796 ± 0.0
2.787ThrTyr: 2.787 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
5.573ValAla: 5.573 ± 0.0
1.194ValCys: 1.194 ± 0.0
5.573ValAsp: 5.573 ± 0.0
3.185ValGlu: 3.185 ± 0.0
2.389ValPhe: 2.389 ± 0.0
3.185ValGly: 3.185 ± 0.0
0.796ValHis: 0.796 ± 0.0
0.796ValIle: 0.796 ± 0.0
7.166ValLys: 7.166 ± 0.0
5.175ValLeu: 5.175 ± 0.0
1.592ValMet: 1.592 ± 0.0
6.768ValAsn: 6.768 ± 0.0
3.583ValPro: 3.583 ± 0.0
0.796ValGln: 0.796 ± 0.0
1.99ValArg: 1.99 ± 0.0
5.971ValSer: 5.971 ± 0.0
5.573ValThr: 5.573 ± 0.0
4.777ValVal: 4.777 ± 0.0
1.194ValTrp: 1.194 ± 0.0
2.787ValTyr: 2.787 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
1.194TrpAla: 1.194 ± 0.0
0.0TrpCys: 0.0 ± 0.0
1.592TrpAsp: 1.592 ± 0.0
0.398TrpGlu: 0.398 ± 0.0
0.398TrpPhe: 0.398 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.796TrpIle: 0.796 ± 0.0
0.0TrpLys: 0.0 ± 0.0
1.194TrpLeu: 1.194 ± 0.0
0.796TrpMet: 0.796 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.398TrpPro: 0.398 ± 0.0
1.194TrpGln: 1.194 ± 0.0
1.194TrpArg: 1.194 ± 0.0
1.99TrpSer: 1.99 ± 0.0
0.796TrpThr: 0.796 ± 0.0
0.398TrpVal: 0.398 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
1.592TrpTyr: 1.592 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.185TyrAla: 3.185 ± 0.0
0.796TyrCys: 0.796 ± 0.0
3.981TyrAsp: 3.981 ± 0.0
1.99TyrGlu: 1.99 ± 0.0
1.99TyrPhe: 1.99 ± 0.0
2.787TyrGly: 2.787 ± 0.0
0.796TyrHis: 0.796 ± 0.0
3.185TyrIle: 3.185 ± 0.0
1.99TyrLys: 1.99 ± 0.0
5.573TyrLeu: 5.573 ± 0.0
1.194TyrMet: 1.194 ± 0.0
3.583TyrAsn: 3.583 ± 0.0
1.99TyrPro: 1.99 ± 0.0
1.99TyrGln: 1.99 ± 0.0
1.99TyrArg: 1.99 ± 0.0
3.583TyrSer: 3.583 ± 0.0
3.185TyrThr: 3.185 ± 0.0
1.592TyrVal: 1.592 ± 0.0
1.194TyrTrp: 1.194 ± 0.0
1.99TyrTyr: 1.99 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2513 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski