Gremmeniella abietina RNA virus L1

Taxonomy: Viruses; Riboviria; Orthornavirae; Duplornaviricota; Chrymotiviricetes; Ghabrivirales; Totiviridae; Victorivirus

Average proteome isoelectric point is 6.93

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q99AT4|Q99AT4_9VIRU Putative coat protein OS=Gremmeniella abietina RNA virus L1 OX=152217 PE=4 SV=1
MM1 pKa = 7.45ANAYY5 pKa = 7.02EE6 pKa = 4.69TNFQTANASPLTGTLADD23 pKa = 4.05PVGGTIQADD32 pKa = 3.52HH33 pKa = 6.03YY34 pKa = 9.81RR35 pKa = 11.84RR36 pKa = 11.84YY37 pKa = 9.59RR38 pKa = 11.84AGVFMSVPDD47 pKa = 3.77MGHH50 pKa = 5.47VSNVGRR56 pKa = 11.84SIFYY60 pKa = 10.17EE61 pKa = 4.15VGRR64 pKa = 11.84HH65 pKa = 5.22HH66 pKa = 7.26GRR68 pKa = 11.84ARR70 pKa = 11.84DD71 pKa = 3.8LLAAPHH77 pKa = 6.81AEE79 pKa = 5.06AIPIDD84 pKa = 3.98CSVDD88 pKa = 2.99INAAEE93 pKa = 4.02AANFEE98 pKa = 4.05GMARR102 pKa = 11.84RR103 pKa = 11.84FSNFSPQWVKK113 pKa = 10.4MDD115 pKa = 4.12LAGMVEE121 pKa = 4.37RR122 pKa = 11.84LAKK125 pKa = 10.19GVTAAGVFGGIDD137 pKa = 3.16TGTLRR142 pKa = 11.84GGQAIRR148 pKa = 11.84VTALGTLDD156 pKa = 3.78SPQTASINSVFIPRR170 pKa = 11.84TVDD173 pKa = 3.11TVGNDD178 pKa = 2.9HH179 pKa = 6.29VFAVLVSAANGEE191 pKa = 4.42GAAVTTDD198 pKa = 3.57VVRR201 pKa = 11.84LDD203 pKa = 4.14ANTNQPMIPAVAGASFATACVEE225 pKa = 3.88ALRR228 pKa = 11.84ILGANMEE235 pKa = 4.31ASGAGDD241 pKa = 3.24VFAYY245 pKa = 10.27AVTRR249 pKa = 11.84GVHH252 pKa = 5.91AGVSVVAHH260 pKa = 6.03TDD262 pKa = 2.89EE263 pKa = 5.22GGWFRR268 pKa = 11.84NVLRR272 pKa = 11.84HH273 pKa = 6.18DD274 pKa = 4.3RR275 pKa = 11.84FRR277 pKa = 11.84VPYY280 pKa = 10.4GGINQGLRR288 pKa = 11.84QYY290 pKa = 10.22PALPALASTSPSSIAAWADD309 pKa = 3.77AIALKK314 pKa = 9.18TAAAVAHH321 pKa = 6.94CDD323 pKa = 3.43PLVPGEE329 pKa = 4.32GGWYY333 pKa = 9.51PSVFTAGQNGTSAPGSSEE351 pKa = 3.86SAEE354 pKa = 4.19VGDD357 pKa = 4.29QEE359 pKa = 4.2ARR361 pKa = 11.84SIGRR365 pKa = 11.84QIASDD370 pKa = 3.27IGRR373 pKa = 11.84FAPAYY378 pKa = 9.78CRR380 pKa = 11.84ALGTLFGLHH389 pKa = 5.92TSSGVAEE396 pKa = 4.25SHH398 pKa = 6.63LSTVAMRR405 pKa = 11.84ALTQDD410 pKa = 3.36VNTDD414 pKa = 2.42RR415 pKa = 11.84HH416 pKa = 5.8LRR418 pKa = 11.84HH419 pKa = 5.81EE420 pKa = 4.46TVAPYY425 pKa = 9.78FWIEE429 pKa = 3.92PTSLIAVNAFGTPAEE444 pKa = 4.19AEE446 pKa = 4.7GYY448 pKa = 9.32GSKK451 pKa = 8.79VTPGDD456 pKa = 3.66TRR458 pKa = 11.84SEE460 pKa = 4.06PCFEE464 pKa = 4.83RR465 pKa = 11.84FRR467 pKa = 11.84LLQKK471 pKa = 10.93GSTANHH477 pKa = 4.52MTVAFKK483 pKa = 10.39MRR485 pKa = 11.84TARR488 pKa = 11.84TSALVSAYY496 pKa = 9.94AAAPAPLADD505 pKa = 3.76LKK507 pKa = 11.05LYY509 pKa = 10.7QFDD512 pKa = 3.78EE513 pKa = 4.94SSVVLPGDD521 pKa = 3.47QLPTQGDD528 pKa = 3.99VAHH531 pKa = 6.79KK532 pKa = 9.99HH533 pKa = 5.43AAADD537 pKa = 3.92PLSSYY542 pKa = 9.43LWKK545 pKa = 10.49RR546 pKa = 11.84GQSCFPAPAEE556 pKa = 4.37FINTNSNYY564 pKa = 8.64GAKK567 pKa = 9.86VRR569 pKa = 11.84LVTWDD574 pKa = 3.8DD575 pKa = 4.0DD576 pKa = 4.65FNASLSDD583 pKa = 3.74LPNDD587 pKa = 3.41EE588 pKa = 4.52EE589 pKa = 4.39MATGVVTFRR598 pKa = 11.84VTVPTGLASAGSNAEE613 pKa = 3.59NRR615 pKa = 11.84EE616 pKa = 3.94AKK618 pKa = 10.05RR619 pKa = 11.84ARR621 pKa = 11.84TRR623 pKa = 11.84GAIALAQAVLRR634 pKa = 11.84ARR636 pKa = 11.84ATGLAVSPSMEE647 pKa = 4.02ISDD650 pKa = 4.17VPPTFDD656 pKa = 4.34TPPLLPAPTYY666 pKa = 11.19SDD668 pKa = 3.52TQSASGPRR676 pKa = 11.84DD677 pKa = 3.64PGPVPVLAVGGGLDD691 pKa = 3.22VGRR694 pKa = 11.84VARR697 pKa = 11.84GAPLPPTAHH706 pKa = 6.87HH707 pKa = 6.25MPQRR711 pKa = 11.84APRR714 pKa = 11.84IAGAVVPPGGPVAGPPAATGGPAAPNVPPPPPAGPLDD751 pKa = 4.01SQDD754 pKa = 4.39PLPAPPAHH762 pKa = 6.62LPAEE766 pKa = 4.36ATAAEE771 pKa = 4.39AVPAQQ776 pKa = 3.62

Molecular weight: 80.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q99AT4|Q99AT4_9VIRU Putative coat protein OS=Gremmeniella abietina RNA virus L1 OX=152217 PE=4 SV=1
MM1 pKa = 7.53IEE3 pKa = 4.23SPVSVRR9 pKa = 11.84ANEE12 pKa = 3.86AGIVGQYY19 pKa = 11.03LKK21 pKa = 11.21GLLNMEE27 pKa = 4.36WASGVMVLSFSQQISEE43 pKa = 4.43VYY45 pKa = 10.21KK46 pKa = 9.26PTFNGLRR53 pKa = 11.84PTDD56 pKa = 3.86LQRR59 pKa = 11.84AAAAYY64 pKa = 7.87LVPDD68 pKa = 4.48FPVQVRR74 pKa = 11.84IEE76 pKa = 4.17RR77 pKa = 11.84GSVLSLLSQVIDD89 pKa = 3.9PPARR93 pKa = 11.84VTDD96 pKa = 3.48RR97 pKa = 11.84CSFRR101 pKa = 11.84WLCDD105 pKa = 3.48PKK107 pKa = 11.01ASYY110 pKa = 10.66AAFPPKK116 pKa = 9.91QHH118 pKa = 6.89PGAMNKK124 pKa = 9.3VNVYY128 pKa = 9.74LNEE131 pKa = 4.12VASSLLSLDD140 pKa = 3.34PAAYY144 pKa = 10.2SSASQALWPHH154 pKa = 6.4KK155 pKa = 10.68GKK157 pKa = 10.17IANDD161 pKa = 3.31QASAIILYY169 pKa = 10.25GYY171 pKa = 8.74GLRR174 pKa = 11.84AQAVPDD180 pKa = 3.87AMHH183 pKa = 6.32VAATLATTPDD193 pKa = 3.35LAKK196 pKa = 10.91ALTNFLKK203 pKa = 10.29ATGANGSRR211 pKa = 11.84LGALLCEE218 pKa = 4.72SNVLLGRR225 pKa = 11.84AAGPADD231 pKa = 3.67LSEE234 pKa = 4.07EE235 pKa = 3.73ARR237 pKa = 11.84YY238 pKa = 7.94RR239 pKa = 11.84TSSDD243 pKa = 3.63VEE245 pKa = 3.92SHH247 pKa = 6.78LAIFSDD253 pKa = 3.9ADD255 pKa = 3.41LGAAIDD261 pKa = 4.82AILDD265 pKa = 3.74EE266 pKa = 4.81EE267 pKa = 4.51IKK269 pKa = 10.59RR270 pKa = 11.84VEE272 pKa = 4.12GSQHH276 pKa = 6.93IEE278 pKa = 3.42FDD280 pKa = 3.77SYY282 pKa = 10.99QEE284 pKa = 3.82HH285 pKa = 6.96WNDD288 pKa = 2.68RR289 pKa = 11.84WAWAVNGAHH298 pKa = 6.48SGHH301 pKa = 6.12VSRR304 pKa = 11.84LYY306 pKa = 10.33PRR308 pKa = 11.84VPKK311 pKa = 10.14PPGMLRR317 pKa = 11.84EE318 pKa = 4.16HH319 pKa = 6.09RR320 pKa = 11.84RR321 pKa = 11.84AWLEE325 pKa = 3.93SVTEE329 pKa = 4.26DD330 pKa = 5.17PRR332 pKa = 11.84TDD334 pKa = 3.01WDD336 pKa = 3.47GKK338 pKa = 7.95TFVSASPKK346 pKa = 10.49LEE348 pKa = 4.2AGKK351 pKa = 8.26TRR353 pKa = 11.84AIFACDD359 pKa = 3.2TVNYY363 pKa = 10.17LAFEE367 pKa = 4.41HH368 pKa = 6.8LLAPVEE374 pKa = 4.2KK375 pKa = 9.55RR376 pKa = 11.84WRR378 pKa = 11.84NSKK381 pKa = 10.7VILDD385 pKa = 4.09PGRR388 pKa = 11.84GGHH391 pKa = 6.75LGMIFRR397 pKa = 11.84TTAARR402 pKa = 11.84ARR404 pKa = 11.84AGVSMMLDD412 pKa = 3.12YY413 pKa = 11.58DD414 pKa = 4.48DD415 pKa = 5.93FNSHH419 pKa = 6.2HH420 pKa = 6.27STRR423 pKa = 11.84AMQMLFQRR431 pKa = 11.84LGDD434 pKa = 3.7RR435 pKa = 11.84VGYY438 pKa = 8.83PADD441 pKa = 3.69KK442 pKa = 10.33LAKK445 pKa = 9.98LVASFEE451 pKa = 3.91KK452 pKa = 9.89MYY454 pKa = 10.0IYY456 pKa = 10.95NGMEE460 pKa = 3.43QVGRR464 pKa = 11.84VKK466 pKa = 9.33GTLMSGHH473 pKa = 7.16RR474 pKa = 11.84GTTFINSVLNKK485 pKa = 10.19AYY487 pKa = 10.86LLIVLGEE494 pKa = 4.19DD495 pKa = 3.0LFEE498 pKa = 5.48RR499 pKa = 11.84SVALHH504 pKa = 6.33VGDD507 pKa = 4.47DD508 pKa = 3.84VYY510 pKa = 11.4FGVRR514 pKa = 11.84TYY516 pKa = 11.59AEE518 pKa = 4.12AGEE521 pKa = 4.43VVTRR525 pKa = 11.84IKK527 pKa = 10.88NSPLRR532 pKa = 11.84MNRR535 pKa = 11.84MKK537 pKa = 10.71QSVGHH542 pKa = 6.0VSTEE546 pKa = 3.74FLRR549 pKa = 11.84NATSGRR555 pKa = 11.84STYY558 pKa = 10.86GYY560 pKa = 9.41FARR563 pKa = 11.84AVASTVSGNWVNEE576 pKa = 4.02MALSPSEE583 pKa = 4.05ALSSIIGAARR593 pKa = 11.84TLVNRR598 pKa = 11.84SGAVNLPLLLHH609 pKa = 6.56PSLVRR614 pKa = 11.84MTGLPRR620 pKa = 11.84EE621 pKa = 4.17DD622 pKa = 3.23HH623 pKa = 6.31KK624 pKa = 11.39KK625 pKa = 10.45LRR627 pKa = 11.84EE628 pKa = 4.04LLLGTTALDD637 pKa = 3.57NGPQYY642 pKa = 11.49SLGGYY647 pKa = 6.23YY648 pKa = 10.23TSVSSLITTTASDD661 pKa = 3.17RR662 pKa = 11.84HH663 pKa = 6.49GYY665 pKa = 7.63TPLPRR670 pKa = 11.84EE671 pKa = 3.83ATTAYY676 pKa = 9.93LSCAADD682 pKa = 3.59PLEE685 pKa = 4.54VNVLTQAGVSVVSAMEE701 pKa = 3.68EE702 pKa = 3.73ASFRR706 pKa = 11.84KK707 pKa = 9.57SLPARR712 pKa = 11.84YY713 pKa = 7.55TGYY716 pKa = 8.27EE717 pKa = 4.09TLRR720 pKa = 11.84LGPKK724 pKa = 9.94SLIRR728 pKa = 11.84SIGTASVVDD737 pKa = 5.93LISASPPRR745 pKa = 11.84GVLEE749 pKa = 4.66RR750 pKa = 11.84YY751 pKa = 8.65PLLTLAKK758 pKa = 9.7RR759 pKa = 11.84RR760 pKa = 11.84LPEE763 pKa = 3.81YY764 pKa = 9.59LVRR767 pKa = 11.84WAVSIAGGNPSAPDD781 pKa = 3.03IGMEE785 pKa = 3.47AWGEE789 pKa = 4.07FKK791 pKa = 10.36HH792 pKa = 6.83GCMIATPMSYY802 pKa = 10.89SDD804 pKa = 3.38AATFGKK810 pKa = 8.94RR811 pKa = 11.84TVSTVLTCPLDD822 pKa = 3.43AHH824 pKa = 6.15VV825 pKa = 4.57

Molecular weight: 90.03 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

1601

776

825

800.5

85.28

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.554 ± 1.778

0.812 ± 0.027

4.872 ± 0.197

4.435 ± 0.396

3.123 ± 0.248

8.307 ± 0.676

2.561 ± 0.011

3.248 ± 0.198

2.561 ± 0.796

8.62 ± 1.426

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.249 ± 0.309

3.435 ± 0.031

6.996 ± 1.23

2.498 ± 0.234

6.558 ± 0.349

7.808 ± 0.77

6.246 ± 0.406

7.995 ± 0.265

1.187 ± 0.198

2.936 ± 0.608
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski