Mycoavidus cysteinexigens

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Mycoavidus

Average proteome isoelectric point is 6.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2280 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z6ETB7|A0A2Z6ETB7_9BURK Ribonuclease PH OS=Mycoavidus cysteinexigens OX=1553431 GN=rph PE=3 SV=1
MM1 pKa = 6.82TTYY4 pKa = 10.79KK5 pKa = 10.88YY6 pKa = 10.41IVDD9 pKa = 3.96EE10 pKa = 4.15RR11 pKa = 11.84WGFEE15 pKa = 4.08DD16 pKa = 4.7ADD18 pKa = 3.93CFEE21 pKa = 5.25SNWGEE26 pKa = 3.6EE27 pKa = 3.97DD28 pKa = 3.26AEE30 pKa = 4.41YY31 pKa = 10.73VARR34 pKa = 11.84EE35 pKa = 3.86VAGNYY40 pKa = 9.17YY41 pKa = 10.21SEE43 pKa = 5.93SEE45 pKa = 4.57GTWEE49 pKa = 3.98WNEE52 pKa = 4.3SISIQIFKK60 pKa = 10.86EE61 pKa = 4.15DD62 pKa = 3.68GTSLGVFEE70 pKa = 4.94VGYY73 pKa = 10.61DD74 pKa = 3.69LEE76 pKa = 4.33PQFWVFEE83 pKa = 4.28EE84 pKa = 4.97KK85 pKa = 10.12PAQRR89 pKa = 11.84SSPCC93 pKa = 3.52

Molecular weight: 10.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z6ETU9|A0A2Z6ETU9_9BURK Ribonuclease 3 OS=Mycoavidus cysteinexigens OX=1553431 GN=rnc PE=3 SV=1
MM1 pKa = 7.51NPRR4 pKa = 11.84EE5 pKa = 4.23TQGMLLGLLSVIIFSLTLPMTRR27 pKa = 11.84IAIQDD32 pKa = 3.09IHH34 pKa = 6.77PLLNGLGRR42 pKa = 11.84SLAAAIPAALLLAWRR57 pKa = 11.84RR58 pKa = 11.84EE59 pKa = 3.82RR60 pKa = 11.84WPTKK64 pKa = 8.31QQFKK68 pKa = 10.71GLAIVALGAIIVFPVCTAWAMRR90 pKa = 11.84TLPASHH96 pKa = 6.36GAIVNGLQPLCVAVYY111 pKa = 10.04AVFFARR117 pKa = 11.84EE118 pKa = 4.01KK119 pKa = 9.89PSRR122 pKa = 11.84TFWLCSIGGSALILTYY138 pKa = 10.44AIRR141 pKa = 11.84AGGGTLMSGDD151 pKa = 3.64IFMLIAVAFGGLGYY165 pKa = 9.31TEE167 pKa = 4.81GGRR170 pKa = 11.84LAKK173 pKa = 10.49QMGGWRR179 pKa = 11.84VICWALVIAAPFLTLPVIWLAWLHH203 pKa = 5.92TGPIALKK210 pKa = 9.03SWLAFGYY217 pKa = 10.68AAFFSQFIGLFIWYY231 pKa = 9.56AGLALGGIARR241 pKa = 11.84VSQVQQLQVFFTLAFSACFFGEE263 pKa = 4.06RR264 pKa = 11.84VGPDD268 pKa = 2.77TWIFAAAVVVMLTLSSRR285 pKa = 11.84TRR287 pKa = 11.84IAALPPSSLTPQKK300 pKa = 10.2IVHH303 pKa = 5.92NN304 pKa = 4.43

Molecular weight: 32.88 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2280

0

2280

795496

43

2826

348.9

38.6

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.623 ± 0.079

0.951 ± 0.014

4.844 ± 0.031

6.034 ± 0.05

3.564 ± 0.035

6.829 ± 0.051

2.496 ± 0.023

5.484 ± 0.044

4.63 ± 0.05

11.037 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.104 ± 0.031

3.539 ± 0.035

4.392 ± 0.037

4.97 ± 0.045

5.994 ± 0.04

6.445 ± 0.08

5.362 ± 0.039

6.468 ± 0.041

1.472 ± 0.028

2.764 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski