Listeria phage LP-030-2

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Psavirus; Listeria virus LP302

Average proteome isoelectric point is 6.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 69 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R4ICE2|R4ICE2_9CAUD Uncharacterized protein OS=Listeria phage LP-030-2 OX=1173743 GN=LP030nr2_054 PE=4 SV=1
MM1 pKa = 7.57KK2 pKa = 10.14KK3 pKa = 10.4CNLCGEE9 pKa = 4.36VFKK12 pKa = 11.29EE13 pKa = 3.74FDD15 pKa = 3.39EE16 pKa = 4.55VVLVNEE22 pKa = 3.74RR23 pKa = 11.84DD24 pKa = 3.94YY25 pKa = 11.62FHH27 pKa = 7.09EE28 pKa = 4.66ACVALSPIKK37 pKa = 10.6YY38 pKa = 10.12AVFEE42 pKa = 4.18NSGDD46 pKa = 3.55ANYY49 pKa = 11.12DD50 pKa = 3.64DD51 pKa = 6.62FIGTCEE57 pKa = 3.87PSEE60 pKa = 4.16IEE62 pKa = 4.25CALLLFDD69 pKa = 4.76EE70 pKa = 4.91GDD72 pKa = 3.75YY73 pKa = 11.37LKK75 pKa = 11.0EE76 pKa = 4.81GEE78 pKa = 4.58DD79 pKa = 3.77KK80 pKa = 11.01EE81 pKa = 4.38

Molecular weight: 9.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R4ICD6|R4ICD6_9CAUD YopX-like domain containing protein OS=Listeria phage LP-030-2 OX=1173743 GN=LP030nr2_044 PE=4 SV=1
MM1 pKa = 7.43GKK3 pKa = 10.33YY4 pKa = 8.07YY5 pKa = 10.08WHH7 pKa = 6.92VSRR10 pKa = 11.84LGGKK14 pKa = 6.75PTEE17 pKa = 3.81IRR19 pKa = 11.84HH20 pKa = 5.37YY21 pKa = 10.6KK22 pKa = 10.26HH23 pKa = 5.13ITKK26 pKa = 9.48MYY28 pKa = 10.53KK29 pKa = 10.29FILRR33 pKa = 11.84NPAMFKK39 pKa = 10.89DD40 pKa = 3.79KK41 pKa = 10.4TLTIYY46 pKa = 11.07DD47 pKa = 3.48HH48 pKa = 7.07AKK50 pKa = 9.8PVTNMTFNEE59 pKa = 3.72IKK61 pKa = 10.7YY62 pKa = 9.87RR63 pKa = 11.84ASLNLCEE70 pKa = 4.24TVEE73 pKa = 4.09RR74 pKa = 11.84KK75 pKa = 9.52YY76 pKa = 11.5VLGLKK81 pKa = 9.69QRR83 pKa = 11.84LTEE86 pKa = 4.07EE87 pKa = 3.78QKK89 pKa = 10.49EE90 pKa = 4.1ARR92 pKa = 11.84KK93 pKa = 9.79

Molecular weight: 11.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

69

0

69

11750

37

1026

170.3

19.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.323 ± 0.516

0.996 ± 0.155

6.247 ± 0.173

8.357 ± 0.306

4.426 ± 0.217

5.549 ± 0.322

1.685 ± 0.23

7.106 ± 0.182

8.987 ± 0.305

8.094 ± 0.324

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.791 ± 0.138

6.528 ± 0.266

2.664 ± 0.194

3.498 ± 0.2

3.498 ± 0.242

5.719 ± 0.199

5.677 ± 0.33

6.281 ± 0.245

1.345 ± 0.158

4.23 ± 0.341
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski