Tatumella ptyseos ATCC 33301

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Tatumella; Tatumella ptyseos

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3337 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A085JL87|A0A085JL87_9GAMM Tyrosine recombinase XerC OS=Tatumella ptyseos ATCC 33301 OX=1005995 GN=xerC PE=3 SV=1
TT1 pKa = 7.4PPVATDD7 pKa = 4.4DD8 pKa = 3.26IAYY11 pKa = 9.02PEE13 pKa = 4.55KK14 pKa = 9.94NTPVSGNVLTNDD26 pKa = 3.35TDD28 pKa = 4.22KK29 pKa = 11.65DD30 pKa = 3.81GDD32 pKa = 4.12PLAVTQFTVEE42 pKa = 3.98NQTAKK47 pKa = 10.83AGATLTLSGVGTLTISSDD65 pKa = 3.06GAYY68 pKa = 9.39TFTPVTGYY76 pKa = 8.91TGPVPSARR84 pKa = 11.84YY85 pKa = 7.91TITDD89 pKa = 3.65GQATATAVLHH99 pKa = 5.75FTDD102 pKa = 3.87ITTGSNTSPVAEE114 pKa = 5.33DD115 pKa = 3.23DD116 pKa = 4.07HH117 pKa = 8.67AVTKK121 pKa = 10.88ADD123 pKa = 3.52TAVSGNVLDD132 pKa = 4.7NDD134 pKa = 3.75SDD136 pKa = 4.42KK137 pKa = 11.72DD138 pKa = 3.8GDD140 pKa = 4.08TLTVTGFSVAGQTLKK155 pKa = 11.02AGEE158 pKa = 4.17TATLDD163 pKa = 3.6GKK165 pKa = 10.05GTLTIGSNGAYY176 pKa = 9.0TFTPLTGYY184 pKa = 8.11TGPVPSATYY193 pKa = 9.67TITDD197 pKa = 3.74GQATSSATLSFSAINTPPVAIADD220 pKa = 3.81HH221 pKa = 6.39AVIDD225 pKa = 3.96GDD227 pKa = 4.22TPVSGNVLSNDD238 pKa = 3.18TDD240 pKa = 4.03KK241 pKa = 11.75DD242 pKa = 3.69GDD244 pKa = 4.2TLTVTQFTVDD254 pKa = 3.5GQTVKK259 pKa = 10.82AGEE262 pKa = 4.04TATISGVGTLTISSDD277 pKa = 2.9GTYY280 pKa = 10.32TFTPVAGYY288 pKa = 8.51TEE290 pKa = 4.45TVPTVSYY297 pKa = 10.21TITDD301 pKa = 3.92GQATASATLIFSDD314 pKa = 3.48TRR316 pKa = 11.84TPPVMAVDD324 pKa = 5.79DD325 pKa = 3.94IAHH328 pKa = 6.92PEE330 pKa = 4.1KK331 pKa = 10.76NSPVTGNVLSNDD343 pKa = 3.15TDD345 pKa = 3.96KK346 pKa = 11.79NGGSLTVTRR355 pKa = 11.84FTVNDD360 pKa = 3.34QTLTAGEE367 pKa = 4.45SATIHH372 pKa = 5.51GVGVLTINANGDD384 pKa = 3.57YY385 pKa = 10.1TFSPEE390 pKa = 3.39IGYY393 pKa = 10.16AGPVPTATYY402 pKa = 9.4TVTNGQSTTSATLSFTDD419 pKa = 5.49IIDD422 pKa = 4.18NPPDD426 pKa = 3.68AVDD429 pKa = 3.58DD430 pKa = 4.04HH431 pKa = 8.03AIVQKK436 pKa = 9.79NTTLSGNALGNDD448 pKa = 3.36SDD450 pKa = 4.76KK451 pKa = 11.72DD452 pKa = 3.58GDD454 pKa = 4.07ALTITDD460 pKa = 4.05FTVNHH465 pKa = 4.99QTFKK469 pKa = 10.94AGEE472 pKa = 3.97TATISGVGTLTFSTSGQYY490 pKa = 10.4IFTPVKK496 pKa = 10.29GYY498 pKa = 10.4VGPVPAATYY507 pKa = 8.27TVSDD511 pKa = 3.98GQLTSQATVYY521 pKa = 10.68FSDD524 pKa = 4.19IKK526 pKa = 10.23NTAPTAVDD534 pKa = 3.29DD535 pKa = 4.53HH536 pKa = 6.41ATTVEE541 pKa = 4.0NTPVSGNVLSNDD553 pKa = 3.25SDD555 pKa = 3.72QDD557 pKa = 3.67GDD559 pKa = 4.25SLTVTQFTVAGQTLSAGKK577 pKa = 7.93TATLSGVGTLTIGSDD592 pKa = 3.09GGYY595 pKa = 8.22TFTPATGYY603 pKa = 8.19TGPVPSVNYY612 pKa = 9.66TITDD616 pKa = 3.79GQATSSATLSFSAINTPPVANNDD639 pKa = 3.51TAVAKK644 pKa = 10.61EE645 pKa = 3.88NTAVSGNVLSNDD657 pKa = 3.18TDD659 pKa = 3.99KK660 pKa = 11.75DD661 pKa = 3.61GDD663 pKa = 4.21TLSVTQFTVDD673 pKa = 3.53GQTLSAGQTATLSGVGTLTIGSNGDD698 pKa = 3.35YY699 pKa = 10.46TFTPVTDD706 pKa = 3.52YY707 pKa = 10.69TGPVPSATYY716 pKa = 9.67TITDD720 pKa = 3.74GQATSSAMLSFSAINTPPVAEE741 pKa = 4.72NDD743 pKa = 3.36TAAPEE748 pKa = 4.35KK749 pKa = 11.05NSTTTGNVLTNDD761 pKa = 3.23SDD763 pKa = 3.99KK764 pKa = 11.71DD765 pKa = 3.56HH766 pKa = 7.42DD767 pKa = 4.32TLSVTTFTVNNQTLNAGEE785 pKa = 4.14TATISGVGTLTIDD798 pKa = 3.58SNGDD802 pKa = 3.29YY803 pKa = 10.87SFTPVTGYY811 pKa = 9.18TGAVPSAKK819 pKa = 9.19YY820 pKa = 9.19TITDD824 pKa = 3.71GQATATATLSFNNIVNTPPSPQDD847 pKa = 3.2DD848 pKa = 4.25TISVQEE854 pKa = 4.08NTPATGNVLSNDD866 pKa = 3.3SDD868 pKa = 4.22KK869 pKa = 11.74DD870 pKa = 3.61GDD872 pKa = 4.21TLTVTQFTIDD882 pKa = 3.64GQTLKK887 pKa = 10.95AGEE890 pKa = 4.22TATLDD895 pKa = 4.22GIGTLTIGSDD905 pKa = 3.57GAFTFTPEE913 pKa = 3.54KK914 pKa = 10.25GYY916 pKa = 9.19TGSVPSATYY925 pKa = 9.44TVTDD929 pKa = 4.04GQTTASAHH937 pKa = 6.68LNIQDD942 pKa = 3.22ITQTYY947 pKa = 8.47TNTPPVANDD956 pKa = 3.2DD957 pKa = 3.86TAVAEE962 pKa = 4.34EE963 pKa = 4.06NTAVSGNVLTNDD975 pKa = 3.29TDD977 pKa = 4.15KK978 pKa = 11.69DD979 pKa = 3.82GDD981 pKa = 4.2TLTVTQFTVDD991 pKa = 3.77GQTLTAGQTATINGVGTLTIGSDD1014 pKa = 3.22GTYY1017 pKa = 10.1TFTPVTGYY1025 pKa = 9.14TGAVPSASYY1034 pKa = 10.03TITDD1038 pKa = 3.86GQATASATLSFSAINTPPVANNDD1061 pKa = 3.21TATAKK1066 pKa = 10.67EE1067 pKa = 3.95NTAVSGNVLSNDD1079 pKa = 3.18TDD1081 pKa = 4.03KK1082 pKa = 11.75DD1083 pKa = 3.69GDD1085 pKa = 4.03TLTVTGFTVDD1095 pKa = 3.64GQTLTAGEE1103 pKa = 4.3TATLSGVGTLTIGSDD1118 pKa = 3.35GAYY1121 pKa = 9.28TFTPVTGYY1129 pKa = 9.14TGAVPSATYY1138 pKa = 9.69TITDD1142 pKa = 3.77GQATASAVLSFTAINTPPVAVNDD1165 pKa = 3.86YY1166 pKa = 9.28VTVDD1170 pKa = 3.17KK1171 pKa = 11.01DD1172 pKa = 3.95SPVSGNVLNNDD1183 pKa = 3.27TDD1185 pKa = 4.18KK1186 pKa = 11.72DD1187 pKa = 3.87GDD1189 pKa = 4.21TLSVTQFSVDD1199 pKa = 3.51GQTLNAGEE1207 pKa = 4.26TATLSGVGTLTIGSDD1222 pKa = 3.35GAYY1225 pKa = 9.37TFTPVSGYY1233 pKa = 10.63VGAVPAATYY1242 pKa = 8.43TISDD1246 pKa = 3.86GQSTAEE1252 pKa = 3.63ASVIFDD1258 pKa = 3.9HH1259 pKa = 7.15APVIEE1264 pKa = 4.34ITQSTEE1270 pKa = 3.42VTYY1273 pKa = 10.41TPGTDD1278 pKa = 2.59ISGFNSSSWQNNWTSAGWKK1297 pKa = 9.43GVWPSYY1303 pKa = 10.75SSTSHH1308 pKa = 6.54LVNLSADD1315 pKa = 3.5GGSYY1319 pKa = 9.51TGTMNAATTFNTNDD1333 pKa = 3.46VLDD1336 pKa = 4.48LTVGWNNGWSGTDD1349 pKa = 3.5DD1350 pKa = 3.67GSSAVLSFSYY1360 pKa = 8.82GTQTLFSITTPGQSTTGTTPGAEE1383 pKa = 4.0YY1384 pKa = 11.18ADD1386 pKa = 3.83AQKK1389 pKa = 10.84YY1390 pKa = 10.38AYY1392 pKa = 7.64ITLSKK1397 pKa = 10.39GIEE1400 pKa = 3.83VSLDD1404 pKa = 3.35GGKK1407 pKa = 7.68TWLDD1411 pKa = 3.24GSTPIPFEE1419 pKa = 3.72TWRR1422 pKa = 11.84LYY1424 pKa = 10.9QKK1426 pKa = 10.64DD1427 pKa = 3.64QTVTDD1432 pKa = 4.0SDD1434 pKa = 4.02LSHH1437 pKa = 7.71ILVKK1441 pKa = 10.69GMQTGVSDD1449 pKa = 4.2HH1450 pKa = 7.05LVLNWDD1456 pKa = 4.13APGSPADD1463 pKa = 4.16DD1464 pKa = 3.8FQISGVSVSQVTEE1477 pKa = 4.13TTSDD1481 pKa = 3.59SDD1483 pKa = 4.02SHH1485 pKa = 6.11TLTYY1489 pKa = 10.76DD1490 pKa = 3.41PSTSSGTDD1498 pKa = 3.17STSSQLAVLPNISVSDD1514 pKa = 3.67SDD1516 pKa = 4.14GDD1518 pKa = 3.97NDD1520 pKa = 3.73IQSATITLSGKK1531 pKa = 10.47SGDD1534 pKa = 3.89QLWINGMDD1542 pKa = 3.77ASTHH1546 pKa = 4.75TAGKK1550 pKa = 10.2ASYY1553 pKa = 10.57SLTSDD1558 pKa = 3.78GEE1560 pKa = 4.51GTLTLTLKK1568 pKa = 10.81AGTSGSLSSSDD1579 pKa = 2.95WNTLLEE1585 pKa = 4.04GLRR1588 pKa = 11.84FGTTGDD1594 pKa = 3.06SGTRR1598 pKa = 11.84QLTVTVNDD1606 pKa = 4.23GQLDD1610 pKa = 4.41SNTEE1614 pKa = 4.03SVDD1617 pKa = 3.31INVTGSASSGDD1628 pKa = 3.78LPGYY1632 pKa = 10.05SADD1635 pKa = 3.79TQTTTTSSLLSTYY1648 pKa = 10.14SLEE1651 pKa = 4.28NVSDD1655 pKa = 3.96LASASDD1661 pKa = 3.58TSSASTTEE1669 pKa = 4.03TLPTLQSLLSTSSTTTSSTGSSASSTTASSSSATDD1704 pKa = 3.44SLHH1707 pKa = 5.21TTSEE1711 pKa = 4.17TSSALLAKK1719 pKa = 10.22EE1720 pKa = 5.21DD1721 pKa = 3.98EE1722 pKa = 4.54LSSNNNTVV1730 pKa = 2.58

Molecular weight: 176.11 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A085JPE5|A0A085JPE5_9GAMM Uncharacterized protein OS=Tatumella ptyseos ATCC 33301 OX=1005995 GN=GTPT_0515 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.6RR12 pKa = 11.84NRR14 pKa = 11.84SHH16 pKa = 7.16GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.22GRR39 pKa = 11.84ARR41 pKa = 11.84LTVSKK46 pKa = 10.99

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3337

0

3337

1003587

37

2922

300.7

33.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.432 ± 0.049

1.115 ± 0.016

5.12 ± 0.035

5.478 ± 0.046

3.816 ± 0.03

7.541 ± 0.039

2.314 ± 0.02

5.838 ± 0.038

3.938 ± 0.031

10.932 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.624 ± 0.023

3.54 ± 0.032

4.646 ± 0.031

4.732 ± 0.043

5.888 ± 0.04

6.477 ± 0.04

5.564 ± 0.038

6.758 ± 0.032

1.411 ± 0.017

2.836 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski