Human adenovirus 56

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Mastadenovirus; Human mastadenovirus D; unclassified Human adenovirus D

Average proteome isoelectric point is 6.49

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 36 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E1AI11|E1AI11_9ADEN E1B 55 kDa protein OS=Human adenovirus 56 OX=880565 GN=E1B PE=3 SV=1
MM1 pKa = 7.47RR2 pKa = 11.84HH3 pKa = 5.98LRR5 pKa = 11.84LLPSTVPGEE14 pKa = 4.16LAVLMLEE21 pKa = 4.64DD22 pKa = 4.47FVDD25 pKa = 4.04TVLEE29 pKa = 4.63DD30 pKa = 3.85EE31 pKa = 4.76LHH33 pKa = 6.57PSPFEE38 pKa = 4.82LGPTLQDD45 pKa = 3.63LYY47 pKa = 11.36DD48 pKa = 4.71LEE50 pKa = 5.3VDD52 pKa = 4.74AHH54 pKa = 7.26DD55 pKa = 5.62DD56 pKa = 3.91DD57 pKa = 5.34PNEE60 pKa = 3.98EE61 pKa = 4.1AVNLIFPEE69 pKa = 4.24SMILQADD76 pKa = 4.0IANEE80 pKa = 4.15STPLHH85 pKa = 6.33TPTLSPIPEE94 pKa = 4.36LEE96 pKa = 4.34EE97 pKa = 4.11EE98 pKa = 4.64DD99 pKa = 4.64EE100 pKa = 4.71LDD102 pKa = 3.55LRR104 pKa = 11.84CYY106 pKa = 10.79EE107 pKa = 4.21EE108 pKa = 5.23GFPPSDD114 pKa = 3.74SEE116 pKa = 4.91DD117 pKa = 3.45EE118 pKa = 4.43RR119 pKa = 11.84GEE121 pKa = 3.79QTMALISDD129 pKa = 4.34YY130 pKa = 11.55ACVTVEE136 pKa = 3.91EE137 pKa = 4.23QVVIEE142 pKa = 4.39NSTEE146 pKa = 3.85PVEE149 pKa = 4.53GCRR152 pKa = 11.84KK153 pKa = 9.06CQYY156 pKa = 10.51HH157 pKa = 6.7RR158 pKa = 11.84DD159 pKa = 3.58KK160 pKa = 11.56SGDD163 pKa = 3.73PNASCALCYY172 pKa = 9.3MKK174 pKa = 9.56QTFSFIYY181 pKa = 10.25SPVSEE186 pKa = 5.06DD187 pKa = 3.15EE188 pKa = 4.37SSPSEE193 pKa = 4.08EE194 pKa = 4.56DD195 pKa = 3.49HH196 pKa = 7.15PSPPDD201 pKa = 3.52LTDD204 pKa = 3.65DD205 pKa = 3.95TPLQVHH211 pKa = 6.55RR212 pKa = 11.84PTPVRR217 pKa = 11.84ASGEE221 pKa = 3.57RR222 pKa = 11.84RR223 pKa = 11.84AAVEE227 pKa = 4.11KK228 pKa = 10.82IEE230 pKa = 5.54DD231 pKa = 4.22LLHH234 pKa = 7.54DD235 pKa = 4.08MGGDD239 pKa = 3.59EE240 pKa = 5.63PLDD243 pKa = 3.88LSLKK247 pKa = 10.14RR248 pKa = 11.84PRR250 pKa = 11.84NN251 pKa = 3.53

Molecular weight: 28.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E1AI22|E1AI22_9ADEN Isoform of E1AI23 Pre-protein VI OS=Human adenovirus 56 OX=880565 GN=L3 PE=2 SV=1
MM1 pKa = 7.77ALTCRR6 pKa = 11.84LRR8 pKa = 11.84IPVPNYY14 pKa = 8.76RR15 pKa = 11.84GRR17 pKa = 11.84SRR19 pKa = 11.84RR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84GMAGSGLNRR31 pKa = 11.84RR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AMRR38 pKa = 11.84RR39 pKa = 11.84RR40 pKa = 11.84LSGGFLPALIPIIAAAIGTIPGIASVALQASQRR73 pKa = 11.84RR74 pKa = 3.83

Molecular weight: 8.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

14

22

36

11115

49

1176

308.8

34.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.224 ± 0.496

1.979 ± 0.324

5.29 ± 0.272

6.577 ± 0.521

3.842 ± 0.241

6.37 ± 0.289

2.564 ± 0.242

3.797 ± 0.231

3.869 ± 0.386

9.591 ± 0.429

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.798 ± 0.254

4.184 ± 0.467

6.712 ± 0.288

4.283 ± 0.295

7.512 ± 0.659

6.541 ± 0.286

5.722 ± 0.306

6.532 ± 0.23

1.323 ± 0.111

3.293 ± 0.281
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski