Candidimonas nitroreducens

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Candidimonas

Average proteome isoelectric point is 6.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4867 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A225M086|A0A225M086_9BURK MFS transporter OS=Candidimonas nitroreducens OX=683354 GN=CEY11_24160 PE=3 SV=1
TT1 pKa = 6.72AQHH4 pKa = 6.97IEE6 pKa = 4.23TQYY9 pKa = 10.27GTLEE13 pKa = 4.07LNGYY17 pKa = 8.1HH18 pKa = 5.76QAADD22 pKa = 3.53GTLTIDD28 pKa = 3.35YY29 pKa = 10.6SYY31 pKa = 11.68VLTKK35 pKa = 10.69APEE38 pKa = 4.17VVGADD43 pKa = 3.22ASDD46 pKa = 4.08TIGVTATDD54 pKa = 4.01RR55 pKa = 11.84DD56 pKa = 3.73GSTDD60 pKa = 3.19GSSIAIKK67 pKa = 10.38IVDD70 pKa = 4.65DD71 pKa = 4.41APQAHH76 pKa = 7.14ADD78 pKa = 3.77VNSVRR83 pKa = 11.84EE84 pKa = 4.15DD85 pKa = 3.46AVDD88 pKa = 3.39ATVSGNVLAASGASVGDD105 pKa = 3.71VADD108 pKa = 3.8TQGADD113 pKa = 3.11GATVTDD119 pKa = 3.54IASNNVPGNTADD131 pKa = 4.09DD132 pKa = 4.21SVSGEE137 pKa = 4.01LTIKK141 pKa = 10.17GAYY144 pKa = 6.28GTVVIHH150 pKa = 7.42ADD152 pKa = 3.01GSYY155 pKa = 10.83DD156 pKa = 3.64YY157 pKa = 11.18TLDD160 pKa = 3.58NSNLAVQGLTPDD172 pKa = 3.96GGSLTDD178 pKa = 3.46TYY180 pKa = 10.76TYY182 pKa = 10.39TITDD186 pKa = 3.46GDD188 pKa = 4.37GDD190 pKa = 4.15SSTATLTITINGADD204 pKa = 4.4DD205 pKa = 4.06GVMVDD210 pKa = 3.47VPGNRR215 pKa = 11.84AAA217 pKa = 4.64

Molecular weight: 21.81 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A225MUF4|A0A225MUF4_9BURK Threonine transporter RhtB OS=Candidimonas nitroreducens OX=683354 GN=CEY11_03885 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 10.06QPSVTRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.0RR14 pKa = 11.84THH16 pKa = 5.76GFRR19 pKa = 11.84VRR21 pKa = 11.84MKK23 pKa = 9.39TRR25 pKa = 11.84GGRR28 pKa = 11.84AVINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.58GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4867

0

4867

1618961

28

4668

332.6

36.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.659 ± 0.056

1.039 ± 0.01

5.188 ± 0.027

5.002 ± 0.033

3.334 ± 0.02

8.643 ± 0.049

2.363 ± 0.019

4.807 ± 0.024

3.134 ± 0.031

10.515 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.507 ± 0.018

2.626 ± 0.032

5.39 ± 0.027

3.953 ± 0.02

6.955 ± 0.042

5.652 ± 0.025

4.943 ± 0.04

7.366 ± 0.027

1.349 ± 0.014

2.575 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski