Snake adenovirus serotype 1 (SnAdV-1)

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Atadenovirus; Snake atadenovirus A

Average proteome isoelectric point is 6.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 28 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|A9CBA0|ORF1_ADES1 Protein ORF1 OS=Snake adenovirus serotype 1 OX=189830 PE=4 SV=1
MM1 pKa = 7.8GDD3 pKa = 4.13NYY5 pKa = 10.56WIDD8 pKa = 3.83PVNLSPQEE16 pKa = 3.92LVEE19 pKa = 3.95TLQRR23 pKa = 11.84IDD25 pKa = 3.32QEE27 pKa = 4.61GYY29 pKa = 8.5EE30 pKa = 4.33VIVVTEE36 pKa = 4.37GGFPMGPFRR45 pKa = 11.84MAFRR49 pKa = 11.84IDD51 pKa = 3.85EE52 pKa = 4.66EE53 pKa = 4.47PNMYY57 pKa = 10.52YY58 pKa = 10.0ISQKK62 pKa = 11.04DD63 pKa = 3.32LALEE67 pKa = 3.85YY68 pKa = 11.06DD69 pKa = 4.17PLQFLHH75 pKa = 6.88WVRR78 pKa = 11.84QYY80 pKa = 11.18SGEE83 pKa = 4.11IINWTHH89 pKa = 7.0HH90 pKa = 5.9GRR92 pKa = 11.84VPWWKK97 pKa = 9.49IFQMLEE103 pKa = 3.66AKK105 pKa = 10.77LEE107 pKa = 3.98DD108 pKa = 3.25SYY110 pKa = 12.07YY111 pKa = 10.79YY112 pKa = 8.1EE113 pKa = 3.79TTMFYY118 pKa = 10.01IPSSISHH125 pKa = 6.8DD126 pKa = 3.54CWSLFLQFWRR136 pKa = 11.84EE137 pKa = 4.15GFGSPPLDD145 pKa = 3.74VAWSS149 pKa = 3.54

Molecular weight: 17.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q8JN70|NP_ADES1 Pre-histone-like nucleoprotein OS=Snake adenovirus serotype 1 OX=189830 GN=L2 PE=3 SV=1
MM1 pKa = 7.58ARR3 pKa = 11.84LRR5 pKa = 11.84RR6 pKa = 11.84AKK8 pKa = 8.8RR9 pKa = 11.84TSYY12 pKa = 10.0RR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84RR16 pKa = 11.84RR17 pKa = 11.84TTRR20 pKa = 11.84TRR22 pKa = 11.84TVVTRR27 pKa = 11.84TARR30 pKa = 11.84STVRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84GGRR39 pKa = 11.84IVYY42 pKa = 7.63RR43 pKa = 11.84TSKK46 pKa = 5.57TTRR49 pKa = 11.84VGTRR53 pKa = 11.84RR54 pKa = 11.84MRR56 pKa = 11.84GGFLPLLAPILAAAIGSIPGIVIAAKK82 pKa = 10.25QKK84 pKa = 10.52

Molecular weight: 9.56 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

28

0

28

9074

58

1085

324.1

36.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.877 ± 0.335

1.995 ± 0.401

4.805 ± 0.251

5.852 ± 0.421

4.386 ± 0.258

6.436 ± 0.418

1.907 ± 0.202

3.989 ± 0.187

4.474 ± 0.597

9.555 ± 0.366

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.292 ± 0.128

4.761 ± 0.521

6.612 ± 0.355

4.397 ± 0.301

6.767 ± 0.66

7.836 ± 0.509

5.709 ± 0.416

6.436 ± 0.274

1.411 ± 0.131

3.505 ± 0.297
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski