Cotton leaf curl Gezira virus-[Cameroon]

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Cotton leaf curl Gezira virus

Average proteome isoelectric point is 7.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C0MHN4|C0MHN4_9GEMI Isoform of C0MHN5 Replication-associated protein OS=Cotton leaf curl Gezira virus-[Cameroon] OX=627501 GN=C1 PE=4 SV=1
MM1 pKa = 7.61GAQKK5 pKa = 10.57DD6 pKa = 3.74WQSNTKK12 pKa = 9.54YY13 pKa = 10.57GKK15 pKa = 9.12PVQIKK20 pKa = 10.41GGIPTIFLCNPGPNSSYY37 pKa = 11.07KK38 pKa = 10.49EE39 pKa = 3.93YY40 pKa = 11.01LDD42 pKa = 3.86EE43 pKa = 4.99EE44 pKa = 4.77KK45 pKa = 10.73NAHH48 pKa = 5.77LKK50 pKa = 9.97SWALKK55 pKa = 8.81NATFITLSNPLYY67 pKa = 10.77SGTNQSPASGGEE79 pKa = 3.96EE80 pKa = 3.9EE81 pKa = 5.46SNQEE85 pKa = 4.0TQDD88 pKa = 3.25

Molecular weight: 9.68 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C0MHN4|C0MHN4_9GEMI Isoform of C0MHN5 Replication-associated protein OS=Cotton leaf curl Gezira virus-[Cameroon] OX=627501 GN=C1 PE=4 SV=1
MM1 pKa = 7.71SKK3 pKa = 10.35RR4 pKa = 11.84PADD7 pKa = 3.87IIISTPASKK16 pKa = 10.3VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFDD24 pKa = 3.39SPGLSSARR32 pKa = 11.84APTVLVTNKK41 pKa = 9.04RR42 pKa = 11.84RR43 pKa = 11.84AWSNRR48 pKa = 11.84PNYY51 pKa = 9.5RR52 pKa = 11.84KK53 pKa = 9.19PRR55 pKa = 11.84MYY57 pKa = 10.9RR58 pKa = 11.84MYY60 pKa = 10.57RR61 pKa = 11.84SPDD64 pKa = 3.29VPKK67 pKa = 10.81GCEE70 pKa = 4.39GPCKK74 pKa = 9.53VQSYY78 pKa = 11.07DD79 pKa = 3.43MNSVMMM85 pKa = 5.32

Molecular weight: 9.78 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

2

8

1030

85

188

128.8

14.76

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.369 ± 1.118

1.553 ± 0.344

3.981 ± 0.784

4.563 ± 0.73

4.369 ± 0.706

5.146 ± 0.429

3.786 ± 0.8

7.087 ± 1.446

6.117 ± 0.71

8.252 ± 1.517

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.01 ± 0.682

6.796 ± 0.737

4.854 ± 0.757

4.951 ± 0.848

6.505 ± 1.244

8.932 ± 1.205

6.893 ± 0.929

4.272 ± 0.74

1.068 ± 0.206

3.495 ± 0.507
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski