Plantago lanceolata latent virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Capulavirus

Average proteome isoelectric point is 7.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A166V5R3|A0A166V5R3_9GEMI Replication-associated protein OS=Plantago lanceolata latent virus OX=1830242 PE=3 SV=1
MM1 pKa = 7.62PRR3 pKa = 11.84QPLTYY8 pKa = 10.0RR9 pKa = 11.84FQGKK13 pKa = 8.62SAFLTYY19 pKa = 9.2PKK21 pKa = 10.34CDD23 pKa = 3.57LTPTSVLDD31 pKa = 3.44YY32 pKa = 10.88LYY34 pKa = 11.3NLLKK38 pKa = 10.91NYY40 pKa = 10.16DD41 pKa = 2.97IFYY44 pKa = 10.99ARR46 pKa = 11.84VCQEE50 pKa = 3.42NHH52 pKa = 5.66QDD54 pKa = 3.62GTKK57 pKa = 10.14HH58 pKa = 5.53LHH60 pKa = 6.69CLVQLAKK67 pKa = 10.69RR68 pKa = 11.84LTTRR72 pKa = 11.84DD73 pKa = 3.39PKK75 pKa = 11.36YY76 pKa = 10.98FDD78 pKa = 2.88ITTANTITSGDD89 pKa = 3.95AQPHH93 pKa = 5.96HH94 pKa = 7.34PNIQVPRR101 pKa = 11.84SDD103 pKa = 3.46AHH105 pKa = 5.36VADD108 pKa = 5.39YY109 pKa = 10.38IAKK112 pKa = 10.19DD113 pKa = 3.47GNFVEE118 pKa = 4.93RR119 pKa = 11.84GVLKK123 pKa = 9.79ATRR126 pKa = 11.84RR127 pKa = 11.84SPKK130 pKa = 9.83KK131 pKa = 10.49SRR133 pKa = 11.84DD134 pKa = 4.09TIWTAILQEE143 pKa = 4.52STSKK147 pKa = 10.73PDD149 pKa = 3.22FLARR153 pKa = 11.84VQSEE157 pKa = 4.23QPYY160 pKa = 8.52TWATQLRR167 pKa = 11.84NLEE170 pKa = 4.05YY171 pKa = 10.28AANSRR176 pKa = 11.84WPEE179 pKa = 3.72PPVLYY184 pKa = 9.99EE185 pKa = 3.41PRR187 pKa = 11.84YY188 pKa = 9.56RR189 pKa = 11.84AFPNLPEE196 pKa = 5.47PIKK199 pKa = 10.65QWAEE203 pKa = 3.85TNLYY207 pKa = 8.41TVSFNSMQLIDD218 pKa = 4.76PDD220 pKa = 4.16IEE222 pKa = 4.46HH223 pKa = 7.61ADD225 pKa = 4.19LDD227 pKa = 4.22WASNTAQEE235 pKa = 4.25EE236 pKa = 4.47LEE238 pKa = 4.18EE239 pKa = 3.93QLLLNSQQPITVSDD253 pKa = 4.43AGPQTT258 pKa = 3.5

Molecular weight: 29.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A166V5P1|A0A166V5P1_9GEMI C3 OS=Plantago lanceolata latent virus OX=1830242 PE=4 SV=1
MM1 pKa = 7.38VKK3 pKa = 10.13RR4 pKa = 11.84KK5 pKa = 9.88RR6 pKa = 11.84STGVTTTYY14 pKa = 11.07AKK16 pKa = 10.26RR17 pKa = 11.84SRR19 pKa = 11.84VGSGYY24 pKa = 9.23RR25 pKa = 11.84RR26 pKa = 11.84RR27 pKa = 11.84WSRR30 pKa = 11.84RR31 pKa = 11.84RR32 pKa = 11.84RR33 pKa = 11.84IVRR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.55GVYY41 pKa = 9.24ARR43 pKa = 11.84HH44 pKa = 6.21RR45 pKa = 11.84SQSVLHH51 pKa = 6.16SLSNATATKK60 pKa = 10.46GKK62 pKa = 10.28AGYY65 pKa = 8.93GWHH68 pKa = 6.78LNEE71 pKa = 4.7IPLGSSYY78 pKa = 10.73PEE80 pKa = 3.67RR81 pKa = 11.84HH82 pKa = 5.41SDD84 pKa = 3.24KK85 pKa = 11.26VKK87 pKa = 10.02VKK89 pKa = 9.98SFRR92 pKa = 11.84FRR94 pKa = 11.84MQFRR98 pKa = 11.84DD99 pKa = 3.58GANGGTNAANVHH111 pKa = 5.68NLYY114 pKa = 10.72LYY116 pKa = 10.34LVKK119 pKa = 10.73DD120 pKa = 3.66NSGGTEE126 pKa = 3.81VPSFDD131 pKa = 4.81KK132 pKa = 10.72IAMMDD137 pKa = 3.65YY138 pKa = 11.02GNVATAIIDD147 pKa = 3.51HH148 pKa = 7.0DD149 pKa = 4.1SEE151 pKa = 4.28KK152 pKa = 10.68RR153 pKa = 11.84FTIVRR158 pKa = 11.84QWKK161 pKa = 7.72YY162 pKa = 9.11TFTGSCNSQYY172 pKa = 10.15PGKK175 pKa = 10.46DD176 pKa = 2.51RR177 pKa = 11.84IDD179 pKa = 4.13FNDD182 pKa = 3.08VVYY185 pKa = 10.91INVDD189 pKa = 3.68TEE191 pKa = 4.55FKK193 pKa = 10.75SATDD197 pKa = 3.32GKK199 pKa = 10.72YY200 pKa = 11.07ANTQKK205 pKa = 10.77NAWVLYY211 pKa = 9.65IIPQSYY217 pKa = 9.9DD218 pKa = 3.32CVIDD222 pKa = 3.0GHH224 pKa = 5.74VNVRR228 pKa = 11.84FEE230 pKa = 4.3SLVV233 pKa = 3.3

Molecular weight: 26.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1196

86

335

199.3

22.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.355 ± 0.756

1.589 ± 0.414

5.1 ± 0.778

5.435 ± 1.016

3.261 ± 0.372

4.515 ± 0.955

2.425 ± 0.394

5.1 ± 0.347

5.268 ± 0.957

8.027 ± 1.104

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.421 ± 0.342

4.849 ± 0.409

6.522 ± 1.594

5.1 ± 0.82

7.358 ± 0.865

7.776 ± 1.773

7.441 ± 1.04

5.268 ± 1.007

1.756 ± 0.232

5.435 ± 0.434
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski