Deinococcus marmoris

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus

Average proteome isoelectric point is 6.58

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4906 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1U7P0H0|A0A1U7P0H0_9DEIO NADH-ubiquinone oxidoreductase chain H OS=Deinococcus marmoris OX=249408 GN=BOO71_0005029 PE=3 SV=1
MM1 pKa = 7.75RR2 pKa = 11.84LKK4 pKa = 10.4FVPVLLAAALGVATAIPIGPSAPIAINANVQDD36 pKa = 3.72ACEE39 pKa = 3.86ITAAPSITFSYY50 pKa = 9.85EE51 pKa = 3.45AASATAITGGSDD63 pKa = 3.39VSVHH67 pKa = 6.22CNQDD71 pKa = 3.09TTFLAGYY78 pKa = 9.48WNDD81 pKa = 3.35TQANADD87 pKa = 3.75GTVDD91 pKa = 4.9LIGPGGQVLQVKK103 pKa = 10.29LDD105 pKa = 3.67TEE107 pKa = 4.74FDD109 pKa = 4.62PIIQSSDD116 pKa = 3.01ATDD119 pKa = 3.98GSRR122 pKa = 11.84LTFGITATAEE132 pKa = 4.09PGQWTAAVGAYY143 pKa = 9.83SATFDD148 pKa = 4.73YY149 pKa = 10.79FVGWW153 pKa = 3.4

Molecular weight: 15.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1U7P4J9|A0A1U7P4J9_9DEIO GSDH domain-containing protein OS=Deinococcus marmoris OX=249408 GN=BOO71_0000880 PE=4 SV=1
MM1 pKa = 7.58TSTTEE6 pKa = 4.42LIVRR10 pKa = 11.84LCLAVVLGTLLGLDD24 pKa = 3.68RR25 pKa = 11.84LRR27 pKa = 11.84VEE29 pKa = 4.38PAAGPRR35 pKa = 11.84THH37 pKa = 7.07ALVALGSALLLIVSSEE53 pKa = 3.45GFMRR57 pKa = 11.84VIQLPHH63 pKa = 5.87VVLDD67 pKa = 4.03PSRR70 pKa = 11.84VAAQVVSGIGFLGAGVILLRR90 pKa = 11.84RR91 pKa = 11.84EE92 pKa = 4.0TEE94 pKa = 4.13TIRR97 pKa = 11.84NLTTAASLWVVAAIGLAVGAGLYY120 pKa = 10.11VGAVVSTVLALLILRR135 pKa = 11.84GVKK138 pKa = 10.17RR139 pKa = 11.84LEE141 pKa = 3.88QTQKK145 pKa = 10.92SLTRR149 pKa = 11.84RR150 pKa = 11.84HH151 pKa = 5.79SLTLRR156 pKa = 11.84FEE158 pKa = 4.41TGAEE162 pKa = 3.97GAAEE166 pKa = 4.05IEE168 pKa = 4.15RR169 pKa = 11.84RR170 pKa = 11.84AVKK173 pKa = 10.37AGARR177 pKa = 11.84CRR179 pKa = 11.84YY180 pKa = 9.5RR181 pKa = 11.84RR182 pKa = 11.84LQLNNKK188 pKa = 8.94KK189 pKa = 10.72GYY191 pKa = 10.1DD192 pKa = 3.53EE193 pKa = 5.0YY194 pKa = 11.03EE195 pKa = 4.37LEE197 pKa = 4.37VSHH200 pKa = 7.08LSTPALMALSRR211 pKa = 11.84NCRR214 pKa = 11.84NVPGLLDD221 pKa = 3.72LSMRR225 pKa = 4.16

Molecular weight: 24.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4906

0

4906

1434284

33

2604

292.4

31.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.093 ± 0.047

0.617 ± 0.01

5.239 ± 0.029

5.472 ± 0.037

3.221 ± 0.022

9.11 ± 0.037

2.099 ± 0.02

3.898 ± 0.026

2.852 ± 0.03

11.593 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.055 ± 0.015

2.66 ± 0.023

5.631 ± 0.028

3.941 ± 0.025

6.785 ± 0.034

5.347 ± 0.025

5.987 ± 0.031

7.614 ± 0.031

1.404 ± 0.014

2.378 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski