Elaeis guineensis var. tenera (Oil palm)

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 30667 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6I9SAT1|A0A6I9SAT1_ELAGV Isoform of A0A6I9SAB7 putative 3 4-dihydroxy-2-butanone kinase isoform X3 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105058673 PE=4 SV=1
MM1 pKa = 7.98DD2 pKa = 4.52VLTGLYY8 pKa = 9.8QGGVWKK14 pKa = 10.44IRR16 pKa = 11.84VEE18 pKa = 4.14LPDD21 pKa = 3.97AYY23 pKa = 9.65PYY25 pKa = 10.43KK26 pKa = 10.66SPSIGFANKK35 pKa = 9.43IYY37 pKa = 10.26HH38 pKa = 6.43PNVDD42 pKa = 3.47EE43 pKa = 4.39MSGSVCLDD51 pKa = 3.56VINQTWSPMFDD62 pKa = 2.95LVNVFEE68 pKa = 4.54VFLPQLLLYY77 pKa = 8.48PNPSDD82 pKa = 3.88PLNGEE87 pKa = 3.76AAALMMRR94 pKa = 11.84DD95 pKa = 3.38RR96 pKa = 11.84PAYY99 pKa = 6.64EE100 pKa = 3.91QKK102 pKa = 10.7VKK104 pKa = 10.42EE105 pKa = 4.14YY106 pKa = 9.89CEE108 pKa = 5.07KK109 pKa = 10.23YY110 pKa = 10.71AKK112 pKa = 10.37PEE114 pKa = 4.07DD115 pKa = 3.77AGAPPEE121 pKa = 4.31EE122 pKa = 4.94DD123 pKa = 3.38SSDD126 pKa = 3.87GEE128 pKa = 4.17LSEE131 pKa = 5.73DD132 pKa = 3.9EE133 pKa = 4.66YY134 pKa = 11.77GSSDD138 pKa = 3.54EE139 pKa = 4.91DD140 pKa = 3.54AVPGNPDD147 pKa = 3.09PP148 pKa = 5.22

Molecular weight: 16.44 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6I9QBJ5|A0A6I9QBJ5_ELAGV putative invertase inhibitor OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105033068 PE=4 SV=1
MM1 pKa = 7.78AISLGAVSTASPIVSLSLLTGRR23 pKa = 11.84SGIGRR28 pKa = 11.84RR29 pKa = 11.84SLSLSKK35 pKa = 10.81PPVTRR40 pKa = 11.84SSPLLHH46 pKa = 6.56TSFLSPPLASLPFPSSFSGLSLGIDD71 pKa = 3.46LGSTKK76 pKa = 9.33VVRR79 pKa = 11.84EE80 pKa = 4.26RR81 pKa = 11.84YY82 pKa = 9.4HH83 pKa = 5.93GLQVRR88 pKa = 11.84AGKK91 pKa = 10.42AGLSLTKK98 pKa = 10.22RR99 pKa = 11.84SRR101 pKa = 11.84SRR103 pKa = 11.84KK104 pKa = 9.07SLARR108 pKa = 11.84THH110 pKa = 6.0GFRR113 pKa = 11.84RR114 pKa = 11.84RR115 pKa = 11.84MRR117 pKa = 11.84TTGGRR122 pKa = 11.84AVLKK126 pKa = 10.31RR127 pKa = 11.84RR128 pKa = 11.84RR129 pKa = 11.84AKK131 pKa = 9.93GRR133 pKa = 11.84KK134 pKa = 8.15VLCTKK139 pKa = 10.58SNPNSGTRR147 pKa = 11.84AA148 pKa = 3.25

Molecular weight: 15.82 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

24292

6375

30667

14051939

7

5109

458.2

50.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.547 ± 0.015

1.853 ± 0.007

5.293 ± 0.009

6.492 ± 0.015

3.948 ± 0.008

6.924 ± 0.015

2.475 ± 0.006

4.98 ± 0.011

5.582 ± 0.013

9.754 ± 0.018

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.449 ± 0.005

3.937 ± 0.008

5.309 ± 0.013

3.678 ± 0.011

5.779 ± 0.011

9.037 ± 0.017

4.634 ± 0.007

6.389 ± 0.01

1.284 ± 0.005

2.653 ± 0.008
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski