Bartonella sp. JB15

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella; unclassified Bartonella

Average proteome isoelectric point is 7.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1265 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1S6XHL2|A0A1S6XHL2_9RHIZ Cysteine desulfurase OS=Bartonella sp. JB15 OX=1933906 GN=BJB15x_006260 PE=4 SV=1
MM1 pKa = 7.19GLIYY5 pKa = 10.4RR6 pKa = 11.84IDD8 pKa = 3.68IEE10 pKa = 4.46DD11 pKa = 3.88DD12 pKa = 3.55RR13 pKa = 11.84SVKK16 pKa = 10.15IEE18 pKa = 3.94MTLTAPGCPVAGEE31 pKa = 3.96MPGWVEE37 pKa = 3.87NAVSAVEE44 pKa = 4.32GVLSVEE50 pKa = 4.67VIMTFDD56 pKa = 4.04PPWTPEE62 pKa = 4.01CMSEE66 pKa = 3.94EE67 pKa = 4.01AQITVGWYY75 pKa = 9.64

Molecular weight: 8.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1S6XGA1|A0A1S6XGA1_9RHIZ Apolipoprotein N-acyltransferase OS=Bartonella sp. JB15 OX=1933906 GN=BJB15x_000350 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.73LVRR12 pKa = 11.84KK13 pKa = 9.15RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATAGGRR28 pKa = 11.84KK29 pKa = 9.15VIAARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.03RR41 pKa = 11.84LSAA44 pKa = 4.03

Molecular weight: 5.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1265

0

1265

402163

30

2841

317.9

35.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.723 ± 0.07

1.067 ± 0.027

5.022 ± 0.05

6.052 ± 0.074

4.565 ± 0.054

6.654 ± 0.08

2.261 ± 0.033

8.473 ± 0.077

6.354 ± 0.069

9.882 ± 0.08

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.454 ± 0.037

4.734 ± 0.069

3.72 ± 0.047

3.913 ± 0.047

5.108 ± 0.059

6.613 ± 0.063

5.252 ± 0.048

6.249 ± 0.06

0.999 ± 0.027

2.905 ± 0.039
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski