Amino acid dipepetide frequency for Fusarium poae negative-stranded virus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.264AlaAla: 4.264 ± 0.0
1.706AlaCys: 1.706 ± 0.0
2.132AlaAsp: 2.132 ± 0.0
4.691AlaGlu: 4.691 ± 0.0
1.706AlaPhe: 1.706 ± 0.0
1.706AlaGly: 1.706 ± 0.0
0.426AlaHis: 0.426 ± 0.0
2.132AlaIle: 2.132 ± 0.0
4.264AlaLys: 4.264 ± 0.0
3.838AlaLeu: 3.838 ± 0.0
2.132AlaMet: 2.132 ± 0.0
2.559AlaAsn: 2.559 ± 0.0
0.853AlaPro: 0.853 ± 0.0
1.706AlaGln: 1.706 ± 0.0
2.985AlaArg: 2.985 ± 0.0
3.412AlaSer: 3.412 ± 0.0
2.559AlaThr: 2.559 ± 0.0
2.132AlaVal: 2.132 ± 0.0
0.0AlaTrp: 0.0 ± 0.0
3.412AlaTyr: 3.412 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.426CysAla: 0.426 ± 0.0
0.0CysCys: 0.0 ± 0.0
1.706CysAsp: 1.706 ± 0.0
0.853CysGlu: 0.853 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.853CysGly: 0.853 ± 0.0
0.426CysHis: 0.426 ± 0.0
0.853CysIle: 0.853 ± 0.0
1.279CysLys: 1.279 ± 0.0
0.426CysLeu: 0.426 ± 0.0
1.279CysMet: 1.279 ± 0.0
1.279CysAsn: 1.279 ± 0.0
0.853CysPro: 0.853 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.853CysArg: 0.853 ± 0.0
2.985CysSer: 2.985 ± 0.0
0.0CysThr: 0.0 ± 0.0
0.426CysVal: 0.426 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.426CysTyr: 0.426 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
1.279AspAla: 1.279 ± 0.0
0.853AspCys: 0.853 ± 0.0
7.249AspAsp: 7.249 ± 0.0
4.264AspGlu: 4.264 ± 0.0
2.132AspPhe: 2.132 ± 0.0
2.559AspGly: 2.559 ± 0.0
0.853AspHis: 0.853 ± 0.0
7.249AspIle: 7.249 ± 0.0
3.838AspLys: 3.838 ± 0.0
6.823AspLeu: 6.823 ± 0.0
1.279AspMet: 1.279 ± 0.0
3.412AspAsn: 3.412 ± 0.0
2.132AspPro: 2.132 ± 0.0
2.985AspGln: 2.985 ± 0.0
1.706AspArg: 1.706 ± 0.0
3.838AspSer: 3.838 ± 0.0
1.279AspThr: 1.279 ± 0.0
2.559AspVal: 2.559 ± 0.0
0.426AspTrp: 0.426 ± 0.0
5.544AspTyr: 5.544 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
2.985GluAla: 2.985 ± 0.0
0.426GluCys: 0.426 ± 0.0
1.279GluAsp: 1.279 ± 0.0
5.97GluGlu: 5.97 ± 0.0
3.412GluPhe: 3.412 ± 0.0
2.559GluGly: 2.559 ± 0.0
2.559GluHis: 2.559 ± 0.0
8.102GluIle: 8.102 ± 0.0
1.706GluLys: 1.706 ± 0.0
7.676GluLeu: 7.676 ± 0.0
1.279GluMet: 1.279 ± 0.0
3.838GluAsn: 3.838 ± 0.0
1.706GluPro: 1.706 ± 0.0
3.412GluGln: 3.412 ± 0.0
2.559GluArg: 2.559 ± 0.0
5.544GluSer: 5.544 ± 0.0
3.412GluThr: 3.412 ± 0.0
2.559GluVal: 2.559 ± 0.0
1.279GluTrp: 1.279 ± 0.0
2.559GluTyr: 2.559 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
3.838PheAla: 3.838 ± 0.0
0.853PheCys: 0.853 ± 0.0
4.264PheAsp: 4.264 ± 0.0
2.559PheGlu: 2.559 ± 0.0
2.132PhePhe: 2.132 ± 0.0
2.985PheGly: 2.985 ± 0.0
0.853PheHis: 0.853 ± 0.0
2.559PheIle: 2.559 ± 0.0
2.132PheLys: 2.132 ± 0.0
5.117PheLeu: 5.117 ± 0.0
0.426PheMet: 0.426 ± 0.0
0.853PheAsn: 0.853 ± 0.0
0.853PhePro: 0.853 ± 0.0
0.853PheGln: 0.853 ± 0.0
3.412PheArg: 3.412 ± 0.0
4.264PheSer: 4.264 ± 0.0
2.132PheThr: 2.132 ± 0.0
2.559PheVal: 2.559 ± 0.0
1.279PheTrp: 1.279 ± 0.0
1.279PheTyr: 1.279 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.559GlyAla: 2.559 ± 0.0
0.0GlyCys: 0.0 ± 0.0
2.559GlyAsp: 2.559 ± 0.0
2.132GlyGlu: 2.132 ± 0.0
2.132GlyPhe: 2.132 ± 0.0
1.706GlyGly: 1.706 ± 0.0
2.132GlyHis: 2.132 ± 0.0
3.412GlyIle: 3.412 ± 0.0
0.426GlyLys: 0.426 ± 0.0
5.97GlyLeu: 5.97 ± 0.0
1.706GlyMet: 1.706 ± 0.0
3.412GlyAsn: 3.412 ± 0.0
2.559GlyPro: 2.559 ± 0.0
1.279GlyGln: 1.279 ± 0.0
1.706GlyArg: 1.706 ± 0.0
1.279GlySer: 1.279 ± 0.0
1.706GlyThr: 1.706 ± 0.0
2.132GlyVal: 2.132 ± 0.0
0.853GlyTrp: 0.853 ± 0.0
1.706GlyTyr: 1.706 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
0.426HisAla: 0.426 ± 0.0
0.426HisCys: 0.426 ± 0.0
1.279HisAsp: 1.279 ± 0.0
4.691HisGlu: 4.691 ± 0.0
1.706HisPhe: 1.706 ± 0.0
1.706HisGly: 1.706 ± 0.0
1.279HisHis: 1.279 ± 0.0
0.853HisIle: 0.853 ± 0.0
2.559HisLys: 2.559 ± 0.0
3.412HisLeu: 3.412 ± 0.0
0.0HisMet: 0.0 ± 0.0
1.706HisAsn: 1.706 ± 0.0
0.853HisPro: 0.853 ± 0.0
0.853HisGln: 0.853 ± 0.0
0.853HisArg: 0.853 ± 0.0
2.132HisSer: 2.132 ± 0.0
1.279HisThr: 1.279 ± 0.0
1.279HisVal: 1.279 ± 0.0
0.0HisTrp: 0.0 ± 0.0
2.132HisTyr: 2.132 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
5.544IleAla: 5.544 ± 0.0
2.985IleCys: 2.985 ± 0.0
5.97IleAsp: 5.97 ± 0.0
8.102IleGlu: 8.102 ± 0.0
2.985IlePhe: 2.985 ± 0.0
5.117IleGly: 5.117 ± 0.0
1.279IleHis: 1.279 ± 0.0
4.691IleIle: 4.691 ± 0.0
2.985IleLys: 2.985 ± 0.0
5.97IleLeu: 5.97 ± 0.0
2.985IleMet: 2.985 ± 0.0
2.559IleAsn: 2.559 ± 0.0
3.838IlePro: 3.838 ± 0.0
1.706IleGln: 1.706 ± 0.0
4.264IleArg: 4.264 ± 0.0
8.955IleSer: 8.955 ± 0.0
4.264IleThr: 4.264 ± 0.0
2.132IleVal: 2.132 ± 0.0
0.426IleTrp: 0.426 ± 0.0
2.132IleTyr: 2.132 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
1.706LysAla: 1.706 ± 0.0
0.853LysCys: 0.853 ± 0.0
2.985LysAsp: 2.985 ± 0.0
5.117LysGlu: 5.117 ± 0.0
3.838LysPhe: 3.838 ± 0.0
1.279LysGly: 1.279 ± 0.0
3.838LysHis: 3.838 ± 0.0
7.249LysIle: 7.249 ± 0.0
4.691LysLys: 4.691 ± 0.0
7.249LysLeu: 7.249 ± 0.0
1.279LysMet: 1.279 ± 0.0
5.117LysAsn: 5.117 ± 0.0
1.706LysPro: 1.706 ± 0.0
2.132LysGln: 2.132 ± 0.0
4.691LysArg: 4.691 ± 0.0
5.117LysSer: 5.117 ± 0.0
3.838LysThr: 3.838 ± 0.0
3.838LysVal: 3.838 ± 0.0
0.426LysTrp: 0.426 ± 0.0
1.706LysTyr: 1.706 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
5.97LeuAla: 5.97 ± 0.0
2.132LeuCys: 2.132 ± 0.0
5.97LeuAsp: 5.97 ± 0.0
7.249LeuGlu: 7.249 ± 0.0
5.117LeuPhe: 5.117 ± 0.0
4.691LeuGly: 4.691 ± 0.0
4.264LeuHis: 4.264 ± 0.0
8.955LeuIle: 8.955 ± 0.0
8.529LeuLys: 8.529 ± 0.0
10.235LeuLeu: 10.235 ± 0.0
3.412LeuMet: 3.412 ± 0.0
4.264LeuAsn: 4.264 ± 0.0
4.264LeuPro: 4.264 ± 0.0
3.412LeuGln: 3.412 ± 0.0
4.691LeuArg: 4.691 ± 0.0
12.367LeuSer: 12.367 ± 0.0
5.544LeuThr: 5.544 ± 0.0
4.264LeuVal: 4.264 ± 0.0
0.853LeuTrp: 0.853 ± 0.0
3.838LeuTyr: 3.838 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
0.426MetAla: 0.426 ± 0.0
0.0MetCys: 0.0 ± 0.0
0.853MetAsp: 0.853 ± 0.0
0.853MetGlu: 0.853 ± 0.0
1.279MetPhe: 1.279 ± 0.0
0.426MetGly: 0.426 ± 0.0
1.279MetHis: 1.279 ± 0.0
4.691MetIle: 4.691 ± 0.0
2.985MetLys: 2.985 ± 0.0
2.559MetLeu: 2.559 ± 0.0
1.279MetMet: 1.279 ± 0.0
2.132MetAsn: 2.132 ± 0.0
0.0MetPro: 0.0 ± 0.0
1.706MetGln: 1.706 ± 0.0
1.279MetArg: 1.279 ± 0.0
2.985MetSer: 2.985 ± 0.0
2.132MetThr: 2.132 ± 0.0
2.132MetVal: 2.132 ± 0.0
0.0MetTrp: 0.0 ± 0.0
2.132MetTyr: 2.132 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
2.985AsnAla: 2.985 ± 0.0
0.853AsnCys: 0.853 ± 0.0
1.706AsnAsp: 1.706 ± 0.0
2.559AsnGlu: 2.559 ± 0.0
2.132AsnPhe: 2.132 ± 0.0
3.412AsnGly: 3.412 ± 0.0
1.279AsnHis: 1.279 ± 0.0
4.691AsnIle: 4.691 ± 0.0
4.264AsnLys: 4.264 ± 0.0
7.676AsnLeu: 7.676 ± 0.0
2.559AsnMet: 2.559 ± 0.0
2.985AsnAsn: 2.985 ± 0.0
2.985AsnPro: 2.985 ± 0.0
1.279AsnGln: 1.279 ± 0.0
0.853AsnArg: 0.853 ± 0.0
4.264AsnSer: 4.264 ± 0.0
2.985AsnThr: 2.985 ± 0.0
0.853AsnVal: 0.853 ± 0.0
0.853AsnTrp: 0.853 ± 0.0
2.132AsnTyr: 2.132 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
2.132ProAla: 2.132 ± 0.0
0.0ProCys: 0.0 ± 0.0
3.838ProAsp: 3.838 ± 0.0
1.279ProGlu: 1.279 ± 0.0
2.559ProPhe: 2.559 ± 0.0
0.853ProGly: 0.853 ± 0.0
0.426ProHis: 0.426 ± 0.0
1.279ProIle: 1.279 ± 0.0
4.691ProLys: 4.691 ± 0.0
3.838ProLeu: 3.838 ± 0.0
0.853ProMet: 0.853 ± 0.0
0.853ProAsn: 0.853 ± 0.0
0.0ProPro: 0.0 ± 0.0
1.279ProGln: 1.279 ± 0.0
0.853ProArg: 0.853 ± 0.0
3.412ProSer: 3.412 ± 0.0
4.264ProThr: 4.264 ± 0.0
0.853ProVal: 0.853 ± 0.0
0.0ProTrp: 0.0 ± 0.0
1.279ProTyr: 1.279 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
0.426GlnAla: 0.426 ± 0.0
0.0GlnCys: 0.0 ± 0.0
1.706GlnAsp: 1.706 ± 0.0
2.132GlnGlu: 2.132 ± 0.0
1.706GlnPhe: 1.706 ± 0.0
0.0GlnGly: 0.0 ± 0.0
0.853GlnHis: 0.853 ± 0.0
2.559GlnIle: 2.559 ± 0.0
2.559GlnLys: 2.559 ± 0.0
3.412GlnLeu: 3.412 ± 0.0
1.279GlnMet: 1.279 ± 0.0
0.426GlnAsn: 0.426 ± 0.0
0.426GlnPro: 0.426 ± 0.0
1.279GlnGln: 1.279 ± 0.0
2.559GlnArg: 2.559 ± 0.0
3.412GlnSer: 3.412 ± 0.0
2.985GlnThr: 2.985 ± 0.0
2.559GlnVal: 2.559 ± 0.0
0.0GlnTrp: 0.0 ± 0.0
1.279GlnTyr: 1.279 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
0.853ArgAla: 0.853 ± 0.0
0.426ArgCys: 0.426 ± 0.0
1.279ArgAsp: 1.279 ± 0.0
2.985ArgGlu: 2.985 ± 0.0
2.132ArgPhe: 2.132 ± 0.0
2.559ArgGly: 2.559 ± 0.0
0.426ArgHis: 0.426 ± 0.0
3.412ArgIle: 3.412 ± 0.0
2.985ArgLys: 2.985 ± 0.0
8.102ArgLeu: 8.102 ± 0.0
2.132ArgMet: 2.132 ± 0.0
4.264ArgAsn: 4.264 ± 0.0
0.853ArgPro: 0.853 ± 0.0
0.853ArgGln: 0.853 ± 0.0
1.279ArgArg: 1.279 ± 0.0
3.838ArgSer: 3.838 ± 0.0
1.706ArgThr: 1.706 ± 0.0
2.559ArgVal: 2.559 ± 0.0
0.0ArgTrp: 0.0 ± 0.0
3.838ArgTyr: 3.838 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
5.544SerAla: 5.544 ± 0.0
0.853SerCys: 0.853 ± 0.0
5.544SerAsp: 5.544 ± 0.0
2.559SerGlu: 2.559 ± 0.0
3.838SerPhe: 3.838 ± 0.0
2.132SerGly: 2.132 ± 0.0
1.279SerHis: 1.279 ± 0.0
7.249SerIle: 7.249 ± 0.0
6.397SerLys: 6.397 ± 0.0
8.955SerLeu: 8.955 ± 0.0
2.985SerMet: 2.985 ± 0.0
7.249SerAsn: 7.249 ± 0.0
5.97SerPro: 5.97 ± 0.0
3.412SerGln: 3.412 ± 0.0
5.544SerArg: 5.544 ± 0.0
3.838SerSer: 3.838 ± 0.0
4.264SerThr: 4.264 ± 0.0
4.691SerVal: 4.691 ± 0.0
0.426SerTrp: 0.426 ± 0.0
5.117SerTyr: 5.117 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
1.279ThrAla: 1.279 ± 0.0
1.279ThrCys: 1.279 ± 0.0
3.412ThrAsp: 3.412 ± 0.0
1.706ThrGlu: 1.706 ± 0.0
2.985ThrPhe: 2.985 ± 0.0
2.985ThrGly: 2.985 ± 0.0
1.279ThrHis: 1.279 ± 0.0
4.691ThrIle: 4.691 ± 0.0
3.838ThrLys: 3.838 ± 0.0
6.397ThrLeu: 6.397 ± 0.0
1.706ThrMet: 1.706 ± 0.0
1.279ThrAsn: 1.279 ± 0.0
2.132ThrPro: 2.132 ± 0.0
0.426ThrGln: 0.426 ± 0.0
2.132ThrArg: 2.132 ± 0.0
5.97ThrSer: 5.97 ± 0.0
3.412ThrThr: 3.412 ± 0.0
2.559ThrVal: 2.559 ± 0.0
1.279ThrTrp: 1.279 ± 0.0
2.132ThrTyr: 2.132 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
2.132ValAla: 2.132 ± 0.0
0.0ValCys: 0.0 ± 0.0
3.412ValAsp: 3.412 ± 0.0
2.985ValGlu: 2.985 ± 0.0
1.706ValPhe: 1.706 ± 0.0
1.279ValGly: 1.279 ± 0.0
1.706ValHis: 1.706 ± 0.0
2.132ValIle: 2.132 ± 0.0
3.838ValLys: 3.838 ± 0.0
2.985ValLeu: 2.985 ± 0.0
0.853ValMet: 0.853 ± 0.0
2.559ValAsn: 2.559 ± 0.0
1.279ValPro: 1.279 ± 0.0
1.706ValGln: 1.706 ± 0.0
3.412ValArg: 3.412 ± 0.0
3.838ValSer: 3.838 ± 0.0
2.559ValThr: 2.559 ± 0.0
0.853ValVal: 0.853 ± 0.0
0.0ValTrp: 0.0 ± 0.0
3.412ValTyr: 3.412 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.426TrpAla: 0.426 ± 0.0
0.426TrpCys: 0.426 ± 0.0
0.426TrpAsp: 0.426 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
0.426TrpPhe: 0.426 ± 0.0
0.853TrpGly: 0.853 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.426TrpIle: 0.426 ± 0.0
1.279TrpLys: 1.279 ± 0.0
0.426TrpLeu: 0.426 ± 0.0
0.426TrpMet: 0.426 ± 0.0
0.426TrpAsn: 0.426 ± 0.0
0.426TrpPro: 0.426 ± 0.0
0.426TrpGln: 0.426 ± 0.0
0.0TrpArg: 0.0 ± 0.0
0.853TrpSer: 0.853 ± 0.0
0.426TrpThr: 0.426 ± 0.0
0.0TrpVal: 0.0 ± 0.0
0.426TrpTrp: 0.426 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.412TyrAla: 3.412 ± 0.0
0.853TyrCys: 0.853 ± 0.0
4.691TyrAsp: 4.691 ± 0.0
2.132TyrGlu: 2.132 ± 0.0
1.279TyrPhe: 1.279 ± 0.0
1.706TyrGly: 1.706 ± 0.0
2.985TyrHis: 2.985 ± 0.0
1.706TyrIle: 1.706 ± 0.0
3.412TyrLys: 3.412 ± 0.0
8.955TyrLeu: 8.955 ± 0.0
0.853TyrMet: 0.853 ± 0.0
2.132TyrAsn: 2.132 ± 0.0
0.853TyrPro: 0.853 ± 0.0
0.853TyrGln: 0.853 ± 0.0
0.853TyrArg: 0.853 ± 0.0
5.544TyrSer: 5.544 ± 0.0
2.132TyrThr: 2.132 ± 0.0
1.706TyrVal: 1.706 ± 0.0
0.0TyrTrp: 0.0 ± 0.0
1.279TyrTyr: 1.279 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2346 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski