Thiohalospira halophila DSM 15071

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thiohalospira; Thiohalospira halophila

Average proteome isoelectric point is 5.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2641 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I1N820|A0A1I1N820_9GAMM Transposase (Fragment) OS=Thiohalospira halophila DSM 15071 OX=1123397 GN=SAMN05660831_00001 PE=4 SV=1
MM1 pKa = 7.02QRR3 pKa = 11.84TSGFTLIEE11 pKa = 3.99LVIVLVILGVLASVAVPQFSDD32 pKa = 3.15LGEE35 pKa = 4.23EE36 pKa = 4.34AEE38 pKa = 4.49STSVRR43 pKa = 11.84AQANAITSANSVNVANCRR61 pKa = 11.84LSEE64 pKa = 4.13TDD66 pKa = 3.89CVTGLSSCDD75 pKa = 3.36AEE77 pKa = 4.55KK78 pKa = 11.26VNSLMDD84 pKa = 3.94NFDD87 pKa = 3.38TTTWGVADD95 pKa = 5.13GACDD99 pKa = 4.02DD100 pKa = 4.03NSGGTFEE107 pKa = 4.55ITDD110 pKa = 3.79TSGDD114 pKa = 3.73PYY116 pKa = 9.26TTSTCCLTRR125 pKa = 11.84NN126 pKa = 3.65

Molecular weight: 13.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I1WG97|A0A1I1WG97_9GAMM 1 4-dihydroxy-2-naphthoate octaprenyltransferase OS=Thiohalospira halophila DSM 15071 OX=1123397 GN=SAMN05660831_02641 PE=4 SV=1
MM1 pKa = 7.6RR2 pKa = 11.84LWPRR6 pKa = 11.84STDD9 pKa = 3.1KK10 pKa = 11.16KK11 pKa = 10.61SATLEE16 pKa = 4.46AIFLAPEE23 pKa = 4.2AGAPVVAVAKK33 pKa = 9.36ATVGEE38 pKa = 4.3AGLVGDD44 pKa = 5.3RR45 pKa = 11.84YY46 pKa = 10.46AAQKK50 pKa = 10.3GFWRR54 pKa = 11.84GPDD57 pKa = 3.2ACPITLIRR65 pKa = 11.84AEE67 pKa = 4.85DD68 pKa = 3.58LDD70 pKa = 4.86LIQRR74 pKa = 11.84RR75 pKa = 11.84HH76 pKa = 5.67HH77 pKa = 6.13LAVTAGEE84 pKa = 4.03HH85 pKa = 5.8RR86 pKa = 11.84RR87 pKa = 11.84NLVVRR92 pKa = 11.84GLPSRR97 pKa = 11.84QLTDD101 pKa = 3.34GVLVLGDD108 pKa = 3.19VRR110 pKa = 11.84LRR112 pKa = 11.84LTVPRR117 pKa = 11.84PPCLYY122 pKa = 10.59LEE124 pKa = 4.84RR125 pKa = 11.84LTQRR129 pKa = 11.84GMGRR133 pKa = 11.84ALRR136 pKa = 11.84KK137 pKa = 10.13SGGVCARR144 pKa = 11.84IIQPGSLHH152 pKa = 7.2AGMAIHH158 pKa = 7.1KK159 pKa = 7.74EE160 pKa = 3.91HH161 pKa = 7.03TEE163 pKa = 4.03RR164 pKa = 11.84EE165 pKa = 4.51SPP167 pKa = 3.53

Molecular weight: 18.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2641

0

2641

821077

39

1778

310.9

33.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.429 ± 0.075

0.697 ± 0.017

5.981 ± 0.038

7.915 ± 0.059

3.065 ± 0.034

9.067 ± 0.048

2.37 ± 0.026

3.908 ± 0.036

2.007 ± 0.038

10.679 ± 0.067

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.085 ± 0.022

2.196 ± 0.026

5.378 ± 0.037

3.201 ± 0.03

8.462 ± 0.057

4.391 ± 0.033

5.107 ± 0.028

7.393 ± 0.039

1.457 ± 0.021

2.212 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski