Thermodesulforhabdus norvegica

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Thermodesulforhabdus

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2661 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I4SNQ6|A0A1I4SNQ6_9DELT Thiol:disulfide interchange protein OS=Thermodesulforhabdus norvegica OX=39841 GN=SAMN05660836_01076 PE=3 SV=1
MM1 pKa = 7.77RR2 pKa = 11.84KK3 pKa = 9.37YY4 pKa = 10.99LVMLIALVAAVAIAVPSFAVEE25 pKa = 4.36FKK27 pKa = 10.84YY28 pKa = 10.9GGMYY32 pKa = 9.76RR33 pKa = 11.84WRR35 pKa = 11.84IHH37 pKa = 6.64ANEE40 pKa = 3.85NMKK43 pKa = 10.43DD44 pKa = 3.68ANSDD48 pKa = 3.86LDD50 pKa = 4.57DD51 pKa = 3.74TANWIDD57 pKa = 3.35QRR59 pKa = 11.84LRR61 pKa = 11.84LYY63 pKa = 8.77FTFVGSEE70 pKa = 3.75NLQLVTKK77 pKa = 10.12WEE79 pKa = 4.25ADD81 pKa = 3.87TLWGLEE87 pKa = 4.09KK88 pKa = 10.75GAGRR92 pKa = 11.84HH93 pKa = 6.42GGGDD97 pKa = 3.09WGADD101 pKa = 3.11AVNLEE106 pKa = 4.25MKK108 pKa = 10.35NVYY111 pKa = 10.32LDD113 pKa = 3.81FMIPNTPVRR122 pKa = 11.84ALVGVQGLSYY132 pKa = 10.97LDD134 pKa = 3.35GWIVADD140 pKa = 4.05DD141 pKa = 3.85ASAFVLKK148 pKa = 9.52TAFDD152 pKa = 3.91PVKK155 pKa = 11.08VEE157 pKa = 4.08LGYY160 pKa = 10.43IAGVNSDD167 pKa = 4.14PVTDD171 pKa = 4.05YY172 pKa = 11.85NDD174 pKa = 3.21MDD176 pKa = 3.96DD177 pKa = 3.68WFLALKK183 pKa = 9.85YY184 pKa = 10.91AEE186 pKa = 4.9GPFNAAAVLFYY197 pKa = 10.69QYY199 pKa = 11.62AHH201 pKa = 7.22DD202 pKa = 4.95ADD204 pKa = 3.75YY205 pKa = 11.0SYY207 pKa = 10.97PNSIGYY213 pKa = 10.01GGTGAVDD220 pKa = 3.4KK221 pKa = 10.68EE222 pKa = 4.35DD223 pKa = 3.42NHH225 pKa = 7.98LVDD228 pKa = 5.38LGFSLGYY235 pKa = 10.8KK236 pKa = 9.4MDD238 pKa = 3.36WLGAKK243 pKa = 10.08VNFVKK248 pKa = 10.88NLGGYY253 pKa = 9.99DD254 pKa = 3.14IAGTDD259 pKa = 3.25EE260 pKa = 4.91DD261 pKa = 4.26EE262 pKa = 5.96DD263 pKa = 4.62YY264 pKa = 11.16EE265 pKa = 4.55GWMVEE270 pKa = 3.95AALDD274 pKa = 4.11FYY276 pKa = 10.96MGAFTFTLGGFWTSDD291 pKa = 3.15DD292 pKa = 3.52FAYY295 pKa = 9.77PAGRR299 pKa = 11.84SHH301 pKa = 6.42YY302 pKa = 8.2WAEE305 pKa = 3.83IAGLGTLDD313 pKa = 3.92VNVAGNDD320 pKa = 3.59WYY322 pKa = 10.02TSSYY326 pKa = 10.73GMGGGLPNRR335 pKa = 11.84GDD337 pKa = 3.83YY338 pKa = 10.93DD339 pKa = 4.24AGDD342 pKa = 3.75APRR345 pKa = 11.84NLWTIHH351 pKa = 6.99AGVAWQALDD360 pKa = 3.52TTKK363 pKa = 9.61VTFNYY368 pKa = 10.28YY369 pKa = 10.83YY370 pKa = 10.74LGTDD374 pKa = 3.7DD375 pKa = 6.14DD376 pKa = 4.41VLANEE381 pKa = 4.71ATDD384 pKa = 4.52EE385 pKa = 4.19YY386 pKa = 10.86DD387 pKa = 4.05DD388 pKa = 5.42SIGHH392 pKa = 6.23EE393 pKa = 4.13LDD395 pKa = 4.5LYY397 pKa = 10.56IDD399 pKa = 4.06HH400 pKa = 7.36KK401 pKa = 11.69LMDD404 pKa = 4.52GLTLRR409 pKa = 11.84LVGAYY414 pKa = 10.55LIGDD418 pKa = 4.11DD419 pKa = 4.18ALSTNEE425 pKa = 4.17EE426 pKa = 4.04DD427 pKa = 4.15DD428 pKa = 4.27NIYY431 pKa = 10.84EE432 pKa = 4.08VGARR436 pKa = 11.84LLWKK440 pKa = 10.18FF441 pKa = 3.6

Molecular weight: 48.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I4T512|A0A1I4T512_9DELT Pyruvate formate lyase activating enzyme OS=Thermodesulforhabdus norvegica OX=39841 GN=SAMN05660836_01234 PE=4 SV=1
MM1 pKa = 7.62AVPKK5 pKa = 10.38RR6 pKa = 11.84RR7 pKa = 11.84TSRR10 pKa = 11.84SRR12 pKa = 11.84RR13 pKa = 11.84NNRR16 pKa = 11.84RR17 pKa = 11.84SHH19 pKa = 6.59DD20 pKa = 4.73AISAPALYY28 pKa = 10.3LCPRR32 pKa = 11.84CKK34 pKa = 10.29SPKK37 pKa = 9.66LPHH40 pKa = 6.4RR41 pKa = 11.84VCPNCGTYY49 pKa = 10.04RR50 pKa = 11.84GRR52 pKa = 11.84DD53 pKa = 3.28VLKK56 pKa = 10.61IEE58 pKa = 4.42EE59 pKa = 4.2EE60 pKa = 4.13

Molecular weight: 6.95 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2661

0

2661

865482

39

1866

325.2

36.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.719 ± 0.042

1.385 ± 0.021

5.031 ± 0.035

7.526 ± 0.049

4.409 ± 0.032

7.641 ± 0.041

1.979 ± 0.018

6.693 ± 0.042

5.361 ± 0.041

10.2 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.409 ± 0.02

2.94 ± 0.022

4.742 ± 0.027

2.543 ± 0.027

6.958 ± 0.041

5.577 ± 0.035

4.507 ± 0.027

7.991 ± 0.041

1.224 ± 0.02

3.166 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski