Sodalis-like symbiont of Philaenus spumarius

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Bruguierivoracaceae; Sodalis; unclassified Sodalis

Average proteome isoelectric point is 7.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1600 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A261QLW3|A0A261QLW3_9GAMM FAD-dependent 2-octaprenylphenol hydroxylase OS=Sodalis-like symbiont of Philaenus spumarius OX=1189304 GN=CE195_12850 PE=3 SV=1
MM1 pKa = 7.34AHH3 pKa = 6.58SFLDD7 pKa = 3.81EE8 pKa = 3.95QHH10 pKa = 6.65EE11 pKa = 4.36EE12 pKa = 3.64TRR14 pKa = 11.84LIIDD18 pKa = 3.94EE19 pKa = 4.4LLEE22 pKa = 5.14DD23 pKa = 4.52GSDD26 pKa = 3.56PEE28 pKa = 3.94ALYY31 pKa = 9.94TIEE34 pKa = 4.44HH35 pKa = 6.77HH36 pKa = 7.21LSADD40 pKa = 4.33DD41 pKa = 4.55FDD43 pKa = 4.5TLEE46 pKa = 4.28KK47 pKa = 10.7LAVEE51 pKa = 4.3AFKK54 pKa = 10.95LGYY57 pKa = 9.79EE58 pKa = 4.19VTDD61 pKa = 3.75AEE63 pKa = 4.26EE64 pKa = 4.96LEE66 pKa = 4.45VEE68 pKa = 4.3GGEE71 pKa = 5.58KK72 pKa = 10.49LMCCDD77 pKa = 3.75AVSEE81 pKa = 4.25IALQAEE87 pKa = 4.82LIDD90 pKa = 4.04AQVEE94 pKa = 4.25QLFTLTLRR102 pKa = 11.84LGVNYY107 pKa = 9.91DD108 pKa = 2.63GWGTYY113 pKa = 10.12FEE115 pKa = 5.85DD116 pKa = 4.77PDD118 pKa = 4.88GEE120 pKa = 4.84EE121 pKa = 4.34FDD123 pKa = 5.31QDD125 pKa = 5.28DD126 pKa = 4.17EE127 pKa = 5.47DD128 pKa = 5.83GPADD132 pKa = 3.97SDD134 pKa = 3.47EE135 pKa = 4.21MHH137 pKa = 6.81ATRR140 pKa = 11.84HH141 pKa = 4.79

Molecular weight: 15.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A261QQ34|A0A261QQ34_9GAMM Thymidine kinase OS=Sodalis-like symbiont of Philaenus spumarius OX=1189304 GN=tdk PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.6RR12 pKa = 11.84NRR14 pKa = 11.84SHH16 pKa = 7.16GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.36GRR39 pKa = 11.84TRR41 pKa = 11.84LTVSSEE47 pKa = 3.72

Molecular weight: 5.5 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1600

0

1600

376700

16

1486

235.4

26.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.876 ± 0.081

1.308 ± 0.025

5.374 ± 0.046

5.662 ± 0.059

3.615 ± 0.037

7.319 ± 0.058

2.537 ± 0.034

5.68 ± 0.056

4.133 ± 0.055

10.753 ± 0.083

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.662 ± 0.038

3.294 ± 0.035

4.434 ± 0.044

4.516 ± 0.055

6.715 ± 0.063

5.53 ± 0.042

5.309 ± 0.04

7.181 ± 0.058

1.279 ± 0.029

2.823 ± 0.038
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski