Flavimaricola marinus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Flavimaricola

Average proteome isoelectric point is 5.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4548 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A238LFH6|A0A238LFH6_9RHOB Carnitinyl-CoA dehydratase OS=Flavimaricola marinus OX=1819565 GN=caiD_1 PE=3 SV=1
MM1 pKa = 6.2VTGVEE6 pKa = 4.07LTYY9 pKa = 10.11DD10 pKa = 3.58TGADD14 pKa = 3.31AMEE17 pKa = 4.09MAEE20 pKa = 5.06AIFGDD25 pKa = 3.99SVEE28 pKa = 4.53VVSASYY34 pKa = 10.47SGSYY38 pKa = 9.69YY39 pKa = 10.84SSAIYY44 pKa = 10.3TNGEE48 pKa = 4.29SISPNVVPGDD58 pKa = 3.5TGVILSTGAATYY70 pKa = 7.5FTNSGGGSNDD80 pKa = 3.47YY81 pKa = 11.54SNTSYY86 pKa = 11.61NSGGEE91 pKa = 4.09NYY93 pKa = 10.13NDD95 pKa = 4.0SFDD98 pKa = 4.93DD99 pKa = 3.64VAGTYY104 pKa = 9.47TYY106 pKa = 11.03DD107 pKa = 3.29AAYY110 pKa = 9.01MDD112 pKa = 4.22IVFIPDD118 pKa = 3.38GDD120 pKa = 4.02VMTMQFVFASDD131 pKa = 4.29EE132 pKa = 4.12YY133 pKa = 10.77PEE135 pKa = 4.49YY136 pKa = 10.88SDD138 pKa = 5.55SIYY141 pKa = 11.06NDD143 pKa = 3.16VVLVEE148 pKa = 4.42VNGEE152 pKa = 4.19VIPLSVTNSSTSVTEE167 pKa = 3.7INQNEE172 pKa = 4.43NVNLYY177 pKa = 10.5NDD179 pKa = 3.84NTADD183 pKa = 3.52QYY185 pKa = 9.5NTEE188 pKa = 4.03MDD190 pKa = 3.79GFTVTMTLTIPVVAGEE206 pKa = 4.24EE207 pKa = 3.74NSIRR211 pKa = 11.84IGIADD216 pKa = 4.28ASDD219 pKa = 3.49SNYY222 pKa = 10.97DD223 pKa = 3.68SNLLIAGDD231 pKa = 4.04SLQTDD236 pKa = 4.22LVAIQDD242 pKa = 3.86DD243 pKa = 4.39VTVKK247 pKa = 10.76EE248 pKa = 4.77GVTKK252 pKa = 10.21TVDD255 pKa = 3.72VLDD258 pKa = 4.24NDD260 pKa = 4.48LNATSGTLVITHH272 pKa = 6.87INDD275 pKa = 3.18IAVTAGDD282 pKa = 4.21TVNLTTGQSVTLNADD297 pKa = 3.25GTLSITADD305 pKa = 3.47SDD307 pKa = 3.54NDD309 pKa = 4.23TVSFTYY315 pKa = 8.58EE316 pKa = 3.45TAAEE320 pKa = 4.51DD321 pKa = 3.81GSGAVLEE328 pKa = 4.34TDD330 pKa = 3.42VGFVTVTTVPCFVAGTRR347 pKa = 11.84ISTPDD352 pKa = 2.93GDD354 pKa = 4.44RR355 pKa = 11.84RR356 pKa = 11.84VEE358 pKa = 3.96DD359 pKa = 4.34LQPGDD364 pKa = 4.21LVLTKK369 pKa = 10.57DD370 pKa = 3.69AGAQQVRR377 pKa = 11.84WAGRR381 pKa = 11.84RR382 pKa = 11.84SVAAQGRR389 pKa = 11.84MAPVLIRR396 pKa = 11.84SGTFGTHH403 pKa = 5.6GDD405 pKa = 3.72VMVSPLHH412 pKa = 6.03RR413 pKa = 11.84VLVTGGVAEE422 pKa = 4.61LLFAEE427 pKa = 4.68PEE429 pKa = 4.37VLVTARR435 pKa = 11.84DD436 pKa = 3.73LVNDD440 pKa = 3.94RR441 pKa = 11.84SVRR444 pKa = 11.84RR445 pKa = 11.84VEE447 pKa = 4.45GGTVDD452 pKa = 3.41YY453 pKa = 10.72VHH455 pKa = 8.03IMFDD459 pKa = 3.18AHH461 pKa = 5.35QVIYY465 pKa = 10.9ADD467 pKa = 3.95GLATEE472 pKa = 4.9SFLPGPQTTSLFEE485 pKa = 4.27DD486 pKa = 4.27EE487 pKa = 5.34IVAEE491 pKa = 4.16ICAIFPEE498 pKa = 4.74LDD500 pKa = 3.33PVTGEE505 pKa = 4.56GYY507 pKa = 10.4SPAARR512 pKa = 11.84RR513 pKa = 11.84TLRR516 pKa = 11.84AYY518 pKa = 9.73EE519 pKa = 4.08GRR521 pKa = 11.84LLGQVAA527 pKa = 3.83

Molecular weight: 55.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A238L9L3|A0A238L9L3_9RHOB Uncharacterized protein OS=Flavimaricola marinus OX=1819565 GN=LOM8899_00414 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNRR10 pKa = 11.84VRR12 pKa = 11.84KK13 pKa = 9.05ARR15 pKa = 11.84HH16 pKa = 4.79GFRR19 pKa = 11.84SRR21 pKa = 11.84MATKK25 pKa = 10.45AGRR28 pKa = 11.84KK29 pKa = 8.81IINARR34 pKa = 11.84RR35 pKa = 11.84AQGRR39 pKa = 11.84SKK41 pKa = 11.13LSAA44 pKa = 3.7

Molecular weight: 5.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4548

0

4548

1434317

29

2947

315.4

34.17

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.253 ± 0.057

0.896 ± 0.01

6.228 ± 0.039

5.747 ± 0.033

3.709 ± 0.025

8.694 ± 0.038

2.037 ± 0.017

5.323 ± 0.027

2.903 ± 0.031

9.93 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.818 ± 0.017

2.582 ± 0.019

5.222 ± 0.028

3.178 ± 0.018

6.489 ± 0.038

5.344 ± 0.029

5.643 ± 0.028

7.321 ± 0.03

1.437 ± 0.016

2.247 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski