Gopherus associated genomovirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykibivirus; Gemykibivirus haeme2

Average proteome isoelectric point is 6.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A384X6V0|A0A384X6V0_9VIRU Replication-associated protein OS=Gopherus associated genomovirus 1 OX=2041417 PE=3 SV=1
MM1 pKa = 7.1FRR3 pKa = 11.84FAARR7 pKa = 11.84YY8 pKa = 9.22GLLTYY13 pKa = 7.26PQCGDD18 pKa = 3.79LDD20 pKa = 3.44PWAIVEE26 pKa = 4.05MLGRR30 pKa = 11.84LGAEE34 pKa = 4.08CIVGRR39 pKa = 11.84EE40 pKa = 4.01SHH42 pKa = 6.15QDD44 pKa = 3.23GGVHH48 pKa = 5.67LHH50 pKa = 6.33AFFMFEE56 pKa = 4.48SKK58 pKa = 10.78FEE60 pKa = 4.17SRR62 pKa = 11.84NVRR65 pKa = 11.84IFDD68 pKa = 3.59VDD70 pKa = 3.42GMHH73 pKa = 6.97PNVVRR78 pKa = 11.84GYY80 pKa = 7.6STPEE84 pKa = 3.24KK85 pKa = 10.21GYY87 pKa = 11.0AYY89 pKa = 10.04AIKK92 pKa = 10.8DD93 pKa = 3.37GDD95 pKa = 4.03FVAGGLGMEE104 pKa = 5.06SIRR107 pKa = 11.84RR108 pKa = 11.84PVSEE112 pKa = 4.73SRR114 pKa = 11.84SVWDD118 pKa = 4.44EE119 pKa = 3.5IVLAGSRR126 pKa = 11.84EE127 pKa = 4.11EE128 pKa = 4.37FFEE131 pKa = 4.29ACARR135 pKa = 11.84LAPRR139 pKa = 11.84ALCCSFTSLNCYY151 pKa = 10.31ADD153 pKa = 3.12WKK155 pKa = 10.2YY156 pKa = 10.85RR157 pKa = 11.84PEE159 pKa = 4.19PVPYY163 pKa = 9.1EE164 pKa = 3.96HH165 pKa = 7.62PGNVSLSTANFPEE178 pKa = 4.01LAAWVSHH185 pKa = 5.1NLEE188 pKa = 4.37GLEE191 pKa = 4.65HH192 pKa = 7.05PGKK195 pKa = 10.23CPPSAEE201 pKa = 4.07EE202 pKa = 3.67QILAIFLPTLCYY214 pKa = 10.52GG215 pKa = 3.65

Molecular weight: 24.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A384X6W5|A0A384X6W5_9VIRU Capsid protein OS=Gopherus associated genomovirus 1 OX=2041417 PE=4 SV=1
MM1 pKa = 7.68AYY3 pKa = 10.13GRR5 pKa = 11.84RR6 pKa = 11.84SYY8 pKa = 11.16RR9 pKa = 11.84RR10 pKa = 11.84TTTRR14 pKa = 11.84RR15 pKa = 11.84KK16 pKa = 9.36RR17 pKa = 11.84AGSSRR22 pKa = 11.84RR23 pKa = 11.84SYY25 pKa = 10.58RR26 pKa = 11.84RR27 pKa = 11.84KK28 pKa = 7.6TYY30 pKa = 7.57TRR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84TYY36 pKa = 10.14GRR38 pKa = 11.84RR39 pKa = 11.84RR40 pKa = 11.84MSTRR44 pKa = 11.84TVLNKK49 pKa = 9.7TSQKK53 pKa = 10.44KK54 pKa = 9.08RR55 pKa = 11.84DD56 pKa = 3.51NMLAYY61 pKa = 10.94SNTTFDD67 pKa = 3.97NPFATTYY74 pKa = 9.5TLGGAIMRR82 pKa = 11.84FPVGNTSIPSEE93 pKa = 4.72FIYY96 pKa = 10.53VWNATGRR103 pKa = 11.84PGEE106 pKa = 4.2NSDD109 pKa = 3.54GQRR112 pKa = 11.84GSKK115 pKa = 10.41LDD117 pKa = 3.38TSLRR121 pKa = 11.84TSEE124 pKa = 4.25TVFARR129 pKa = 11.84GLKK132 pKa = 10.09EE133 pKa = 4.66KK134 pKa = 9.54ITLEE138 pKa = 4.33TNNAAPWHH146 pKa = 5.36WRR148 pKa = 11.84RR149 pKa = 11.84ICFTSKK155 pKa = 11.17DD156 pKa = 3.99DD157 pKa = 4.66FGEE160 pKa = 4.53ADD162 pKa = 4.63PDD164 pKa = 3.38TSAYY168 pKa = 9.37FRR170 pKa = 11.84RR171 pKa = 11.84TSNGRR176 pKa = 11.84VRR178 pKa = 11.84LLRR181 pKa = 11.84AQSDD185 pKa = 4.02SEE187 pKa = 4.27YY188 pKa = 11.17LNDD191 pKa = 3.69EE192 pKa = 4.22LFEE195 pKa = 4.29GEE197 pKa = 5.43RR198 pKa = 11.84NVDD201 pKa = 2.94WLSALNAPLSRR212 pKa = 11.84KK213 pKa = 9.32HH214 pKa = 6.76FSIKK218 pKa = 9.64YY219 pKa = 9.32DD220 pKa = 3.16KK221 pKa = 10.97TRR223 pKa = 11.84VLRR226 pKa = 11.84SQNQAGNIFTFNLWHH241 pKa = 6.37NMGHH245 pKa = 6.2NIVYY249 pKa = 10.32AGEE252 pKa = 4.14QTGEE256 pKa = 4.09RR257 pKa = 11.84MVDD260 pKa = 3.38SAVSVSGRR268 pKa = 11.84PGMGNYY274 pKa = 9.69YY275 pKa = 10.5VVDD278 pKa = 3.87IFRR281 pKa = 11.84KK282 pKa = 10.09HH283 pKa = 6.63GINDD287 pKa = 3.71DD288 pKa = 3.55QSTLTFTPEE297 pKa = 3.46ATFFWHH303 pKa = 6.68EE304 pKa = 4.05KK305 pKa = 9.79

Molecular weight: 35.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

845

215

325

281.7

32.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.982 ± 0.643

1.893 ± 0.753

5.444 ± 0.499

6.864 ± 1.01

5.917 ± 0.304

8.639 ± 0.655

2.722 ± 0.328

3.432 ± 0.098

3.669 ± 0.493

7.456 ± 0.815

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.249 ± 0.042

4.26 ± 0.993

4.734 ± 0.885

1.775 ± 0.226

8.639 ± 1.65

7.811 ± 0.344

5.207 ± 2.141

5.68 ± 0.613

2.13 ± 0.148

4.497 ± 0.101
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski