Thalassobaculum litoreum DSM 18839

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Thalassobaculaceae; Thalassobaculum; Thalassobaculum litoreum

Average proteome isoelectric point is 6.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4959 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1G7RJU1|A0A1G7RJU1_9PROT Probable phosphoglycerate mutase OS=Thalassobaculum litoreum DSM 18839 OX=1123362 GN=SAMN05660686_03409 PE=4 SV=1
MM1 pKa = 7.17TVIPSDD7 pKa = 4.29PLFGDD12 pKa = 2.72QWYY15 pKa = 9.28LHH17 pKa = 5.81NTGQSGGTVGQDD29 pKa = 2.68IRR31 pKa = 11.84VLGAWPDD38 pKa = 3.61YY39 pKa = 8.86TGEE42 pKa = 4.44GIRR45 pKa = 11.84IAVIDD50 pKa = 4.09DD51 pKa = 3.66GVRR54 pKa = 11.84YY55 pKa = 6.8THH57 pKa = 7.46PDD59 pKa = 2.84LSGTYY64 pKa = 9.86DD65 pKa = 3.55AEE67 pKa = 4.16NDD69 pKa = 3.66HH70 pKa = 6.98NIVTGEE76 pKa = 3.89GDD78 pKa = 3.45ATPIADD84 pKa = 4.27AYY86 pKa = 10.83SHH88 pKa = 6.21GTQVSGFSAAAANGTGLVGVAYY110 pKa = 9.83GATFTGIRR118 pKa = 11.84ISDD121 pKa = 3.65ADD123 pKa = 3.95GEE125 pKa = 4.66LVNAAPAFHH134 pKa = 6.95LASDD138 pKa = 4.02ADD140 pKa = 3.95VTNNSYY146 pKa = 11.35GNEE149 pKa = 3.73IFYY152 pKa = 10.54EE153 pKa = 4.41EE154 pKa = 5.16PGSLDD159 pKa = 4.27AIADD163 pKa = 3.81TATTGRR169 pKa = 11.84AGLGTVHH176 pKa = 6.28VFASGNSRR184 pKa = 11.84IQGTLSTHH192 pKa = 6.04GPEE195 pKa = 4.27QNSPYY200 pKa = 10.03QITVAATDD208 pKa = 3.56ADD210 pKa = 4.02GQIATFSSPGANVLVAAPGAGVLGVSGEE238 pKa = 4.04DD239 pKa = 3.74DD240 pKa = 5.15GYY242 pKa = 11.48DD243 pKa = 3.56LTDD246 pKa = 3.57GTSFSAPIVSGVAALVLQANPTLGMRR272 pKa = 11.84DD273 pKa = 3.41VQEE276 pKa = 3.83ILAYY280 pKa = 9.9SAYY283 pKa = 9.48DD284 pKa = 3.4TGADD288 pKa = 3.33PLTRR292 pKa = 11.84AEE294 pKa = 4.25ILADD298 pKa = 3.77TVGSEE303 pKa = 3.92AALAEE308 pKa = 4.07LDD310 pKa = 3.9EE311 pKa = 4.73PVRR314 pKa = 11.84AAYY317 pKa = 8.53EE318 pKa = 4.02AGISLALSYY327 pKa = 10.5PWTTVEE333 pKa = 5.66NGATDD338 pKa = 3.44WNGGGLTASHH348 pKa = 7.86DD349 pKa = 3.87YY350 pKa = 11.59GFGQVDD356 pKa = 3.16ARR358 pKa = 11.84AATRR362 pKa = 11.84LAEE365 pKa = 4.29TWDD368 pKa = 3.48ATPNTVTNQAVVTVTSTTAVAVPDD392 pKa = 3.67GDD394 pKa = 3.81AAGVSQSLTVDD405 pKa = 2.67AAMDD409 pKa = 3.73VEE411 pKa = 4.61FATVDD416 pKa = 3.11VDD418 pKa = 4.43IPHH421 pKa = 7.39GDD423 pKa = 3.35LGQLRR428 pKa = 11.84IEE430 pKa = 4.31LTSPHH435 pKa = 6.2GTTSYY440 pKa = 11.13LIYY443 pKa = 11.04NPDD446 pKa = 3.26FEE448 pKa = 6.43AYY450 pKa = 9.44EE451 pKa = 3.73ILARR455 pKa = 11.84QDD457 pKa = 3.25GLLDD461 pKa = 3.98EE462 pKa = 5.93LPDD465 pKa = 3.62LTFFGANVTTLMSSQHH481 pKa = 5.86YY482 pKa = 9.81GEE484 pKa = 4.76SAAGDD489 pKa = 3.21WTLRR493 pKa = 11.84VTDD496 pKa = 4.27TEE498 pKa = 4.42TGTVGTLEE506 pKa = 4.21SWSLTLYY513 pKa = 11.17GDD515 pKa = 3.42ATTADD520 pKa = 3.57DD521 pKa = 4.28RR522 pKa = 11.84YY523 pKa = 11.2VYY525 pKa = 9.83TDD527 pKa = 3.01QYY529 pKa = 10.65ATLATADD536 pKa = 3.54AGRR539 pKa = 11.84SVLVDD544 pKa = 3.36SDD546 pKa = 4.01GGTDD550 pKa = 3.99TINAAAVSGPVAIHH564 pKa = 7.0LDD566 pKa = 3.7GTVGAIYY573 pKa = 10.1GAAFRR578 pKa = 11.84VADD581 pKa = 3.65GTEE584 pKa = 3.65IEE586 pKa = 4.3NLYY589 pKa = 10.07TGDD592 pKa = 4.82GDD594 pKa = 4.97DD595 pKa = 4.85LLAGSALANVLVAGRR610 pKa = 11.84GSDD613 pKa = 3.45SLTGGAGDD621 pKa = 5.55DD622 pKa = 3.95ILDD625 pKa = 4.28GGSGLDD631 pKa = 3.26TARR634 pKa = 11.84FSGLSSSYY642 pKa = 11.02AIGVSDD648 pKa = 4.58SEE650 pKa = 4.79TVVDD654 pKa = 4.45GADD657 pKa = 3.38GRR659 pKa = 11.84DD660 pKa = 3.01ILRR663 pKa = 11.84NTEE666 pKa = 3.58ILAFDD671 pKa = 4.29DD672 pKa = 4.4GNRR675 pKa = 11.84LSTAPVSVSEE685 pKa = 4.5IGFDD689 pKa = 3.58ADD691 pKa = 5.53FYY693 pKa = 11.53LATNDD698 pKa = 3.76DD699 pKa = 3.66VVAAGFDD706 pKa = 3.34SGNAYY711 pKa = 10.43LHH713 pKa = 5.77YY714 pKa = 10.23LQFGGFEE721 pKa = 3.98DD722 pKa = 4.09RR723 pKa = 11.84APNALFDD730 pKa = 4.14SGDD733 pKa = 3.82YY734 pKa = 10.82LAVNADD740 pKa = 3.27VAAAGMNPLLHH751 pKa = 5.53YY752 pKa = 10.16HH753 pKa = 7.19LYY755 pKa = 10.39GHH757 pKa = 7.37LEE759 pKa = 3.86GRR761 pKa = 11.84DD762 pKa = 3.09AGAQFDD768 pKa = 4.34GEE770 pKa = 4.78AYY772 pKa = 10.47LAANPDD778 pKa = 3.38VAGAGIDD785 pKa = 3.73PMLHH789 pKa = 5.8YY790 pKa = 9.78LTVGFGEE797 pKa = 4.4GRR799 pKa = 11.84LFQSDD804 pKa = 4.05PLFGG808 pKa = 4.84

Molecular weight: 83.33 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1G7KP24|A0A1G7KP24_9PROT Acetyl-CoA acetyltransferase OS=Thalassobaculum litoreum DSM 18839 OX=1123362 GN=SAMN05660686_01124 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 10.1QPSVLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.63GFRR19 pKa = 11.84SRR21 pKa = 11.84MATVGGRR28 pKa = 11.84NVIRR32 pKa = 11.84ARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.76GRR39 pKa = 11.84KK40 pKa = 8.91RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4959

0

4959

1586320

39

2184

319.9

34.6

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.571 ± 0.054

0.851 ± 0.01

6.302 ± 0.035

5.894 ± 0.032

3.485 ± 0.023

8.907 ± 0.038

2.017 ± 0.02

4.939 ± 0.026

2.834 ± 0.031

9.932 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.529 ± 0.017

2.357 ± 0.02

5.233 ± 0.027

2.822 ± 0.02

7.279 ± 0.036

5.189 ± 0.025

5.56 ± 0.027

7.758 ± 0.028

1.364 ± 0.014

2.176 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski