Elephant endotheliotropic herpesvirus 4

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Betaherpesvirinae; Proboscivirus; unclassified Proboscivirus

Average proteome isoelectric point is 6.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 120 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0S1TP62|A0A0S1TP62_9BETA Nuclear egress protein 2 OS=Elephant endotheliotropic herpesvirus 4 OX=548914 GN=U34 PE=3 SV=1
MM1 pKa = 7.41KK2 pKa = 10.15RR3 pKa = 11.84YY4 pKa = 10.21KK5 pKa = 10.4NWAHH9 pKa = 6.78ALNVHH14 pKa = 5.69TASPAVTPEE23 pKa = 4.03TFRR26 pKa = 11.84LSYY29 pKa = 10.83KK30 pKa = 10.59LLILVAVFATTMEE43 pKa = 4.16ISRR46 pKa = 11.84EE47 pKa = 3.84EE48 pKa = 4.27DD49 pKa = 2.81VDD51 pKa = 4.31FCFEE55 pKa = 4.05EE56 pKa = 4.91VEE58 pKa = 4.26QCEE61 pKa = 4.44VEE63 pKa = 4.36YY64 pKa = 11.05ADD66 pKa = 4.78PEE68 pKa = 4.62DD69 pKa = 4.15NEE71 pKa = 4.57EE72 pKa = 4.05VSDD75 pKa = 5.15DD76 pKa = 4.39DD77 pKa = 5.66GEE79 pKa = 4.55SSDD82 pKa = 4.57GDD84 pKa = 4.12SVDD87 pKa = 3.27HH88 pKa = 7.32AEE90 pKa = 4.04EE91 pKa = 3.97EE92 pKa = 4.13KK93 pKa = 10.98RR94 pKa = 11.84MEE96 pKa = 4.16EE97 pKa = 3.84EE98 pKa = 3.6CGYY101 pKa = 10.83RR102 pKa = 11.84DD103 pKa = 3.58LPPRR107 pKa = 11.84EE108 pKa = 4.09VQGPPVCLDD117 pKa = 3.26LTVIEE122 pKa = 5.23PEE124 pKa = 4.02MQTANIKK131 pKa = 9.9CHH133 pKa = 5.39EE134 pKa = 4.28VCDD137 pKa = 4.38EE138 pKa = 4.04YY139 pKa = 11.7GKK141 pKa = 10.44RR142 pKa = 11.84GYY144 pKa = 10.54SFQGLIYY151 pKa = 10.08YY152 pKa = 9.53DD153 pKa = 3.84PQEE156 pKa = 5.1DD157 pKa = 4.93DD158 pKa = 4.03EE159 pKa = 7.44DD160 pKa = 6.28DD161 pKa = 4.22DD162 pKa = 6.04GEE164 pKa = 4.73YY165 pKa = 10.79DD166 pKa = 5.87DD167 pKa = 6.04EE168 pKa = 6.83DD169 pKa = 4.52FDD171 pKa = 4.75EE172 pKa = 6.59DD173 pKa = 4.3EE174 pKa = 4.9EE175 pKa = 4.56EE176 pKa = 4.14LTAMM180 pKa = 5.11

Molecular weight: 20.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0S1TQM3|A0A0S1TQM3_9BETA Large tegument protein OS=Elephant endotheliotropic herpesvirus 4 OX=548914 GN=U31 PE=3 SV=1
MM1 pKa = 6.63QTTAMLLTICLGMALCGGGRR21 pKa = 11.84RR22 pKa = 11.84DD23 pKa = 3.43GTVGRR28 pKa = 11.84RR29 pKa = 11.84TARR32 pKa = 11.84DD33 pKa = 3.38ASDD36 pKa = 4.69LPIGDD41 pKa = 4.45SPTSNKK47 pKa = 9.76AARR50 pKa = 11.84SPVRR54 pKa = 11.84LPRR57 pKa = 11.84NVSRR61 pKa = 11.84VSGPVLLSPDD71 pKa = 4.22SRR73 pKa = 11.84PVMCGDD79 pKa = 4.42VISKK83 pKa = 8.79SICAYY88 pKa = 9.87FVIDD92 pKa = 3.69GVSRR96 pKa = 11.84IKK98 pKa = 9.89TRR100 pKa = 11.84SFHH103 pKa = 6.48HH104 pKa = 6.71PNVLL108 pKa = 3.38

Molecular weight: 11.51 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

120

0

120

55876

79

2327

465.6

51.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.237 ± 0.235

2.33 ± 0.151

5.611 ± 0.185

4.701 ± 0.143

4.378 ± 0.204

6.432 ± 0.397

2.738 ± 0.102

4.594 ± 0.221

3.964 ± 0.177

9.075 ± 0.331

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.323 ± 0.111

4.494 ± 0.157

5.612 ± 0.328

3.34 ± 0.259

5.985 ± 0.185

8.046 ± 0.359

6.908 ± 0.269

7.318 ± 0.18

0.889 ± 0.071

4.023 ± 0.209
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski