Murine feces-associated gemycircularvirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; unclassified Gemycircularvirus

Average proteome isoelectric point is 7.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S0SZ49|A0A2S0SZ49_9VIRU Cap OS=Murine feces-associated gemycircularvirus 1 OX=2171384 PE=4 SV=1
MM1 pKa = 7.39NPGPGPWSSTMLYY14 pKa = 10.12SGPSDD19 pKa = 3.42PLEE22 pKa = 4.32NLCHH26 pKa = 6.68HH27 pKa = 7.09SDD29 pKa = 3.72SKK31 pKa = 11.62HH32 pKa = 7.23DD33 pKa = 4.04MDD35 pKa = 6.14SLPIPNADD43 pKa = 3.32DD44 pKa = 4.04SVLSEE49 pKa = 4.31YY50 pKa = 10.79PNITRR55 pKa = 11.84LLVQISSSAAKK66 pKa = 8.25RR67 pKa = 11.84TAMVEE72 pKa = 4.13RR73 pKa = 11.84ISMFLQILSEE83 pKa = 4.14SSEE86 pKa = 4.45LEE88 pKa = 4.05TVANSMLRR96 pKa = 11.84TSIQISFLHH105 pKa = 6.98SEE107 pKa = 3.88ILLAVGTMQRR117 pKa = 11.84RR118 pKa = 11.84MATFVAGNYY127 pKa = 8.23EE128 pKa = 4.12DD129 pKa = 4.56QNLLEE134 pKa = 4.3VLKK137 pKa = 10.68EE138 pKa = 3.81ADD140 pKa = 3.32KK141 pKa = 11.59TMDD144 pKa = 3.56GTDD147 pKa = 4.3SEE149 pKa = 4.52LQSLGTSFSEE159 pKa = 3.99LRR161 pKa = 11.84ASISLVTWSNPSTASVHH178 pKa = 5.04TQTGSLEE185 pKa = 4.15WIDD188 pKa = 5.52RR189 pKa = 11.84LMCTIQNSRR198 pKa = 11.84SVIHH202 pKa = 6.05NWMAFGNGLGSFLPVANMVCIAPCTLGCSQSHH234 pKa = 5.85SPPLRR239 pKa = 11.84GGDD242 pKa = 3.48FHH244 pKa = 7.77DD245 pKa = 4.48AEE247 pKa = 4.61ARR249 pKa = 11.84RR250 pKa = 11.84SPSVAGLAWRR260 pKa = 11.84RR261 pKa = 11.84QEE263 pKa = 3.64EE264 pKa = 4.23WAFTNWII271 pKa = 3.85

Molecular weight: 29.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S0SZ49|A0A2S0SZ49_9VIRU Cap OS=Murine feces-associated gemycircularvirus 1 OX=2171384 PE=4 SV=1
MM1 pKa = 7.65AYY3 pKa = 10.07SRR5 pKa = 11.84RR6 pKa = 11.84SRR8 pKa = 11.84FRR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84YY14 pKa = 7.44PARR17 pKa = 11.84RR18 pKa = 11.84YY19 pKa = 9.43ARR21 pKa = 11.84RR22 pKa = 11.84SFRR25 pKa = 11.84SPRR28 pKa = 11.84FARR31 pKa = 11.84RR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84TTRR38 pKa = 11.84MSTRR42 pKa = 11.84RR43 pKa = 11.84VRR45 pKa = 11.84NLAARR50 pKa = 11.84KK51 pKa = 9.7CRR53 pKa = 11.84DD54 pKa = 3.32NMLSTPRR61 pKa = 11.84NDD63 pKa = 3.49AGEE66 pKa = 4.17VQPAQPYY73 pKa = 10.69LMTGGTSYY81 pKa = 11.26RR82 pKa = 11.84FLFSPSFRR90 pKa = 11.84SVGSIIGPEE99 pKa = 3.86EE100 pKa = 3.93RR101 pKa = 11.84QISASAAEE109 pKa = 4.07RR110 pKa = 11.84WKK112 pKa = 10.58SKK114 pKa = 10.7CYY116 pKa = 8.6MRR118 pKa = 11.84GYY120 pKa = 10.48KK121 pKa = 8.78EE122 pKa = 4.22TVEE125 pKa = 5.38LEE127 pKa = 4.52TNDD130 pKa = 3.22SSSWLWRR137 pKa = 11.84RR138 pKa = 11.84IVFTTLGWGAPLADD152 pKa = 3.95YY153 pKa = 10.56IAANVTQRR161 pKa = 11.84GYY163 pKa = 11.34GRR165 pKa = 11.84LMYY168 pKa = 10.98NLDD171 pKa = 3.78NGQHH175 pKa = 6.5DD176 pKa = 4.62VLLGDD181 pKa = 4.08AYY183 pKa = 11.48SRR185 pKa = 11.84LFEE188 pKa = 4.18GQRR191 pKa = 11.84TVDD194 pKa = 3.06WVNPLTAKK202 pKa = 10.0VDD204 pKa = 3.4SRR206 pKa = 11.84RR207 pKa = 11.84IRR209 pKa = 11.84VISDD213 pKa = 3.19TLRR216 pKa = 11.84TIQSPNSEE224 pKa = 4.05SGRR227 pKa = 11.84YY228 pKa = 7.52QVTKK232 pKa = 9.83RR233 pKa = 11.84WYY235 pKa = 8.53PVNKK239 pKa = 10.18SIIYY243 pKa = 10.47DD244 pKa = 3.64DD245 pKa = 4.93DD246 pKa = 4.66EE247 pKa = 6.27NGTAHH252 pKa = 7.12KK253 pKa = 10.33FSVGWASGAAQANAGDD269 pKa = 4.38LFVFDD274 pKa = 4.87MFDD277 pKa = 3.19AATDD281 pKa = 3.65ATEE284 pKa = 4.23DD285 pKa = 3.36TTLAMGTSGTYY296 pKa = 8.98YY297 pKa = 8.22WHH299 pKa = 7.07EE300 pKa = 4.0GSGRR304 pKa = 3.49

Molecular weight: 34.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

575

271

304

287.5

32.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.0 ± 0.682

1.217 ± 0.433

5.391 ± 0.41

4.87 ± 0.713

3.478 ± 0.363

6.435 ± 0.62

1.913 ± 0.716

4.174 ± 0.684

2.087 ± 0.421

7.826 ± 1.727

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.478 ± 0.655

4.348 ± 0.31

4.348 ± 0.564

3.304 ± 0.266

9.913 ± 3.271

11.478 ± 1.753

6.957 ± 0.471

4.87 ± 0.05

2.609 ± 0.018

3.304 ± 1.514
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski