Xylella phage Sano

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Sanovirus; Xylella virus Sano

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 77 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|V5Q8F6|V5Q8F6_9CAUD Tail assembly protein OS=Xylella phage Sano OX=1415148 GN=Sano_51 PE=4 SV=1
MM1 pKa = 7.7ADD3 pKa = 3.76EE4 pKa = 4.4YY5 pKa = 11.08TPPLSPNIVWVFKK18 pKa = 10.79GNEE21 pKa = 4.02YY22 pKa = 10.81NPPLSPNIEE31 pKa = 4.32WIFGADD37 pKa = 3.55DD38 pKa = 4.32DD39 pKa = 5.37GGGNEE44 pKa = 4.42LRR46 pKa = 11.84KK47 pKa = 9.94SSYY50 pKa = 10.16MLLLTMM56 pKa = 5.94

Molecular weight: 6.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|V5Q7F2|V5Q7F2_9CAUD Tail assembly protein OS=Xylella phage Sano OX=1415148 GN=Sano_47 PE=4 SV=1
MM1 pKa = 7.65EE2 pKa = 5.3IKK4 pKa = 10.33PRR6 pKa = 11.84IGADD10 pKa = 2.74LWHH13 pKa = 7.58AITQGTTLKK22 pKa = 10.56VRR24 pKa = 11.84FILALQSLIFGASLLVRR41 pKa = 11.84PMPAPTRR48 pKa = 11.84WALFATLPVYY58 pKa = 10.28AWSAMLWLSGSLMLWRR74 pKa = 11.84VLSTRR79 pKa = 11.84PVTWLAWASNVFALFTWFIICLSYY103 pKa = 11.06AAFEE107 pKa = 4.27GWRR110 pKa = 11.84GLVGTHH116 pKa = 6.36ILALVMAVFCVLRR129 pKa = 11.84TEE131 pKa = 4.35ATRR134 pKa = 11.84SDD136 pKa = 4.25LEE138 pKa = 4.35TAA140 pKa = 4.06

Molecular weight: 15.76 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

77

0

77

17774

47

1446

230.8

25.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.375 ± 0.685

0.771 ± 0.107

6.577 ± 0.28

6.712 ± 0.301

3.82 ± 0.172

7.578 ± 0.285

1.935 ± 0.194

4.529 ± 0.158

5.469 ± 0.311

8.09 ± 0.258

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.791 ± 0.161

3.747 ± 0.182

4.439 ± 0.271

3.719 ± 0.308

6.757 ± 0.222

5.564 ± 0.211

5.531 ± 0.209

6.83 ± 0.247

1.738 ± 0.158

3.027 ± 0.205
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski